PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g027820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 186aa    MW: 21068.4 Da    PI: 9.5124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g027820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-122576255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r  h+e+E++RR ++ s ++ Lr+ lP  +   ++K s ++ +  Av+YI +Lq
  Csa12g027820.1 25 RILHKEVEKQRRLEMASLYASLRSRLPLEF--IQGKRSTSDQVNGAVNYIEYLQ 76
                    778*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.5662375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-122389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-92576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-62580No hitNo description
Gene3DG3DSA:4.10.280.103.3E-92589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00372981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MNDLPEKRGR PSKKLRVSSD QNMERILHKE VEKQRRLEMA SLYASLRSRL PLEFIQGKRS  60
TSDQVNGAVN YIEYLQRNIK DMSSKRDDLI LLYGRSIGSS NEQSWNEISN HVVIRPCLVG  120
VEIVFSILQT PFSSVLKVLR ERGLCVLGCI SSNVNDRLIH TLQAEVNDMA LIDLADLKVA  180
LTLMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g027820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1426211e-164AY142621.1 Arabidopsis thaliana unknown protein (At4g25400) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448440.11e-133PREDICTED: transcription factor bHLH118
SwissprotQ9STJ76e-95BH118_ARATH; Transcription factor bHLH118
TrEMBLA0A1J3IUJ12e-98A0A1J3IUJ1_NOCCA; Uncharacterized protein
STRINGXP_010448440.11e-132(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.12e-97bHLH family protein