PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g029800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 158aa    MW: 17411.5 Da    PI: 6.0011
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g029800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.66.7e-275103199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +Ca C+ l++ C ++C++  yfp+++  +f+ v+++FGa++v  +l++l +eeer++a++sl+y Aear rdP +G +g++++ ++ l+ +++e+
  Csa12g029800.1   5 RCAICRALKQICDPNCIYKAYFPSND-TRFEDVQQIFGAAKVADILNRLgSEEERKIAANSLCYAAEARRRDPNSGIYGMVQHHESILNDVEQEI 98 
                     6**********************998.89********************77777****************************************9 PP

          DUF260  95 allke 99 
                     + + +
  Csa12g029800.1  99 KFAVN 103
                     98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.8554105IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-255100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MNSNRCAICR ALKQICDPNC IYKAYFPSND TRFEDVQQIF GAAKVADILN RLGSEEERKI  60
AANSLCYAAE ARRRDPNSGI YGMVQHHESI LNDVEQEIKF AVNELKTNVG PDQVPKFFHV  120
PIPDDFLTTS GKMGDGHRVD DASTSAGPSA TLPKNHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-15610512111LOB family transfactor Ramosa2.1
5ly0_B2e-15610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g029800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451208.11e-116PREDICTED: LOB domain-containing protein 32-like
SwissprotO496514e-48LBD32_ARATH; LOB domain-containing protein 32
TrEMBLR0GTP64e-69R0GTP6_9BRAS; Uncharacterized protein
STRINGXP_010451208.11e-115(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.12e-50LOB domain-containing protein 32