PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g030150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 361aa    MW: 39355.2 Da    PI: 10.0562
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g030150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30286344259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  Csa12g030150.1 286 SDEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHNHA 344
                     69*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-16250283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-32273344IPR003657WRKY domain
PROSITE profilePS5081129.872280346IPR003657WRKY domain
SuperFamilySSF1182901.44E-25283344IPR003657WRKY domain
SMARTSM007745.9E-37285345IPR003657WRKY domain
PfamPF031066.0E-26287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAVELMMSSS SSYGAAGGKG DGFPSISAKL EEDTALREAA SAGIHGVEEF LKLIGQNHQT  60
EEITAVTDVA VNSFKKMISL LGRSRTGHAR FRRAPTTTTT TTTMQTPFIK QTTVEKEAEE  120
EEEKKPEITA VFAKQKTEQY HGGGSAFRVY CPTPIHRRPP LSHSNNNQNQ TKNGSSSSSP  180
PIPPPPSTIN FAPSQPVSAA TNSFMSSHSH RCETESTHMS SGFEFTNPSH LSGSRGKPPL  240
SASASLKRRC NSSPSSRCHC SKKRKSRVKR VIRVPAVSSK MADIPSDEFS WRKYGQKPIK  300
GSPHPRGYYK CSSVRGCPAR KHVERALDDA MMLIVTYEGD HNHALVLETT TTTTHHDKTL  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21273345273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246264KRRCNSSPSSRCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g030150.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727460.0AF272746.1 Arabidopsis thaliana WRKY DNA-binding protein 7 (WRKY7) mRNA, complete cds.
GenBankAY0721510.0AY072151.1 Arabidopsis thaliana putative DNA-binding protein (At4g24240) mRNA, complete cds.
GenBankAY0845830.0AY084583.1 Arabidopsis thaliana clone 112528 mRNA, complete sequence.
GenBankAY0964900.0AY096490.1 Arabidopsis thaliana putative DNA-binding protein (At4g24240) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448589.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX00.0WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLR0H0E10.0R0H0E1_9BRAS; Uncharacterized protein
STRINGXP_010448589.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-152WRKY DNA-binding protein 7