PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g030380.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 965aa MW: 106065 Da PI: 5.8854

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g030380.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	595	645	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Csa12g030380.1 595 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 645 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	3.63E-5	218	289	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.757	584	665	IPR003035	RWP-RK domain
Pfam	PF02042	7.4E-26	597	645	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.86E-23	864	953	No hit	No description
Pfam	PF00564	3.1E-20	868	949	IPR000270	PB1 domain
PROSITE profile	PS51745	27.975	868	950	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.5E-27	868	950	No hit	No description
SMART	SM00666	2.1E-28	868	950	IPR000270	PB1 domain
CDD	cd06407	1.74E-34	869	949	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MCEPDDNSGR NGVAHPPSSR SRELLMDVDD LDLDGSWPLD QIPYLSSSNR MISPIFVSSS 60 SEQPCSPLWA FSDGGGNGGI HHHANGGGGG DEEKNSSASG VPSFRLAEYP LFLPYSSPSA 120 AENTTEKHNN NFQFPSPLMS LVPPENADNY CVIKERMTQA LRYFKDSTEQ HVLAQVWAPV 180 RKNGRDLLTT LGQPFVLNPN GNGLNQYRMI SLTYMFSVDS ESDIELGLPG RVFRQKLPEW 240 TPNVQYYSSK EFSRLDHALH YNVRGTLALP VFNPSGQSCI GVVELIMTSE KIHYAPEVDK 300 VCKALEAVNL KSSEILDHQT TQICNESRQN ALAEILEVLT VVCETHNLPL AQTWVPCQHG 360 SVLANGGGLK KNCTSFDGSC MGQICMSTTD MACYVVDAHV WGFRDACLEH HLQKGQGVAG 420 RAFLNGGSCF CRDITKFCKT QYPLVHYALM FKLTTCFAIS LQSSYTGDDS YILEFFLPSS 480 ITDDQEQDSL LGSILVTMKE HFQSLRVASG VDFGEDDDKL SFEIIQALPD KKIHSKIESI 540 RVPFSGSKSN ATETRLIPQP AVQSSDPVKE NINVATVNGV VKEKKKTEKK RGKTEKTISL 600 DVLQQYFTGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR KIKKVNRSIT KLKRVIESVQ 660 GTDGGLDLTS MAVSSIPWTH GQASAQPLNS PSGCKPPELP NTNNSPNHWS SDHSPHEPNG 720 SPEVPSNGHK RSRTVDESAG TPTSHGSCDG NQLDEAKVPN QDPLFTVGES PGLFFPPYSR 780 DHDVSAASFS MPNRLLGSID HFRGMLIEDA GSSKDLRNLC STTAFDDKFP DSNWMNNDNN 840 SNNNIYAPPK EEAIANVTRE PSGSETRTVT IKASYKDDII RFRISSGSGI MELKDEVAKR 900 LKLDAGTFDI KYLDDDNEWV LIACDADLQE CLEIPRSSRT NIVRLLVHDV TTNLGSSCES 960 TGEL*

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MCEPDDNSGR NGVAHPPSSR SRELLMDVDD LDLDGSWPLD QIPYLSSSNR MISPIFVSSS  60
SEQPCSPLWA FSDGGGNGGI HHHANGGGGG DEEKNSSASG VPSFRLAEYP LFLPYSSPSA  120
AENTTEKHNN NFQFPSPLMS LVPPENADNY CVIKERMTQA LRYFKDSTEQ HVLAQVWAPV  180
RKNGRDLLTT LGQPFVLNPN GNGLNQYRMI SLTYMFSVDS ESDIELGLPG RVFRQKLPEW  240
TPNVQYYSSK EFSRLDHALH YNVRGTLALP VFNPSGQSCI GVVELIMTSE KIHYAPEVDK  300
VCKALEAVNL KSSEILDHQT TQICNESRQN ALAEILEVLT VVCETHNLPL AQTWVPCQHG  360
SVLANGGGLK KNCTSFDGSC MGQICMSTTD MACYVVDAHV WGFRDACLEH HLQKGQGVAG  420
RAFLNGGSCF CRDITKFCKT QYPLVHYALM FKLTTCFAIS LQSSYTGDDS YILEFFLPSS  480
ITDDQEQDSL LGSILVTMKE HFQSLRVASG VDFGEDDDKL SFEIIQALPD KKIHSKIESI  540
RVPFSGSKSN ATETRLIPQP AVQSSDPVKE NINVATVNGV VKEKKKTEKK RGKTEKTISL  600
DVLQQYFTGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR KIKKVNRSIT KLKRVIESVQ  660
GTDGGLDLTS MAVSSIPWTH GQASAQPLNS PSGCKPPELP NTNNSPNHWS SDHSPHEPNG  720
SPEVPSNGHK RSRTVDESAG TPTSHGSCDG NQLDEAKVPN QDPLFTVGES PGLFFPPYSR  780
DHDVSAASFS MPNRLLGSID HFRGMLIEDA GSSKDLRNLC STTAFDDKFP DSNWMNNDNN  840
SNNNIYAPPK EEAIANVTRE PSGSETRTVT IKASYKDDII RFRISSGSGI MELKDEVAKR  900
LKLDAGTFDI KYLDDDNEWV LIACDADLQE CLEIPRSSRT NIVRLLVHDV TTNLGSSCES  960
TGEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g030380.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010448623.1	0.0	PREDICTED: protein NLP7 isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	R0GSX5	0.0	R0GSX5_9BRAS; Uncharacterized protein
STRING	XP_010439097.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]