PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g031870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 309aa    MW: 34273.2 Da    PI: 5.7535
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g031870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30140198259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++p+ ++itY++eHnhe
  Csa12g031870.1 140 SDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERNPQNPDKFTITYTNEHNHE 198
                     7**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-31125200IPR003657WRKY domain
SuperFamilySSF1182903.53E-26134200IPR003657WRKY domain
PROSITE profilePS5081132.707134200IPR003657WRKY domain
SMARTSM007748.2E-36139199IPR003657WRKY domain
PfamPF031062.7E-25141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGEVAYMDEG DLEAIVRGYS GSGEAFSGES SGGFSPSFCL PMETSSFYEP DMETTGLDEL  60
GELYKPFYPF STQTVLTSSV SVPEDPISFR DEKKQRTHGC LLSNGSRLDH IRIPESKSKK  120
SKKNQQKRVV EQVKEENLLS DAWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CLARKQVERN  180
PQNPDKFTIT YTNEHNHELP TRRNSLAGST RAKSSQTKPT LTKKSGKELV SSPTSNPMIA  240
SADESAVAVQ EMCVSEMSTH QAAGEIEGMS NCLPSDLMST TGTFPVFTGD FDELLNSQEF  300
FNGYLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-20130200877Probable WRKY transcription factor 4
2lex_A2e-20130200877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g031870.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423940.0AF442394.1 Arabidopsis thaliana WRKY transcription factor 29 (WRKY29) mRNA, complete cds.
GenBankBT0260710.0BT026071.1 Arabidopsis thaliana At4g23550 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448687.10.0PREDICTED: probable WRKY transcription factor 29
SwissprotQ9SUS10.0WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLR0F6220.0R0F622_9BRAS; Uncharacterized protein
STRINGXP_010448687.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.11e-160WRKY family protein
Publications ? help Back to Top
  1. Zhou F, et al.
    High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression.
    Plant J., 2004. 39(6): p. 920-32
    [PMID:15341634]
  2. Liu XQ, et al.
    OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1.
    Cell Res., 2005. 15(8): p. 593-603
    [PMID:16117849]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  4. Yi SY,Shirasu K,Moon JS,Lee SG,Kwon SY
    The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition.
    PLoS ONE, 2014. 9(2): p. e88951
    [PMID:24586453]
  5. Cambiagno DA,Lonez C,Ruysschaert JM,Alvarez ME
    The synthetic cationic lipid diC14 activates a sector of the Arabidopsis defence network requiring endogenous signalling components.
    Mol. Plant Pathol., 2015. 16(9): p. 963-72
    [PMID:25727690]
  6. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  7. Li Y,Williams B,Dickman M
    Arabidopsis B-cell lymphoma2 (Bcl-2)-associated athanogene 7 (BAG7)-mediated heat tolerance requires translocation, sumoylation and binding to WRKY29.
    New Phytol., 2017. 214(2): p. 695-705
    [PMID:28032645]
  8. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]