PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g034150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 185aa    MW: 20254.8 Da    PI: 6.1199
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g034150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26082.56.7e-26371361100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +Ca C+ l++ C ++C +  +fp+++  +f+ v+++FGa+nv + l++l++ee r++a++sl+y Aear rdP +G +g++++ ++ l+ +++++
  Csa12g034150.1  37 RCAICRALKQICDPNCKYKAHFPSND-TRFEDVQQIFGAANVANKLNSLETEEqRKIAANSLCYAAEARRRDPKSGIAGMVQHHESILNDVEQDI 130
                     6**********************998.89********************766559***************************************9 PP

          DUF260  95 allkee 100
                     + +++e
  Csa12g034150.1 131 KFAENE 136
                     998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.43936137IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-2337133IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
ASFKFSVLSV LSDIRSLTFS IEGIREETKQ KEMNSNRCAI CRALKQICDP NCKYKAHFPS  60
NDTRFEDVQQ IFGAANVANK LNSLETEEQR KIAANSLCYA AEARRRDPKS GIAGMVQHHE  120
SILNDVEQDI KFAENELKTN MGPDQVPKFV PVPIPDGFLT TVDDASTSAG PSAGPSATLP  180
KNHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-153813712111LOB family transfactor Ramosa2.1
5ly0_B8e-153813712111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g034150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089492.11e-112PREDICTED: LOB domain-containing protein 32-like
SwissprotO496511e-46LBD32_ARATH; LOB domain-containing protein 32
TrEMBLR0GTP63e-55R0GTP6_9BRAS; Uncharacterized protein
STRINGXP_010448859.11e-111(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.11e-48LOB domain-containing protein 32