PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g034930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 550aa    MW: 60123.6 Da    PI: 5.8442
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g034930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.1e-30307365259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  Csa12g034930.1 307 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgACPVRKQVQRCAEDRSILITTYEGNHNHP 365
                     7****************************99***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-33291367IPR003657WRKY domain
SuperFamilySSF1182902.62E-27299367IPR003657WRKY domain
PROSITE profilePS5081128.908301367IPR003657WRKY domain
SMARTSM007741.6E-35306366IPR003657WRKY domain
PfamPF031062.6E-26308365IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MFRFPVSLGG SRDEARHDQI TPLDEHRVVV DEVDFFSEKR DRVSREDIND DEDEEANKVH  60
VKMENSRIEE SDRSRDVNIG LNLLTANTGS DESTVDDGLS MDMEDKRAKI ENAQLQEELK  120
KMKIENQRLR DMLSQATNNF NSLQMQLVAV MRQQEQRNSS QEHFLATEGK AEGRKRQELH  180
TMVPRQFMDL GPSSGATEHE AEVSSEERTM IHSGSPPSLL ESSNLRENGK SSNLRENGKR  240
LLGREESPEE SESNAWGNPN KVPKHNSSSS NNNNNANGNV IDQSAAEATM RKARVSVRAR  300
SEAPMISDGC QWRKYGQKMA KGNPCPRAYY RCTMAGACPV RKQVQRCAED RSILITTYEG  360
NHNHPLPPAA MAMASTTTAA ASMLLSGSMS SQDGLMNPTN LLARAILPCS SSMATISASA  420
PFPTITLDLT NSPNGNNPNM TTNNPLMQFV QRPGFNPAVL PQVVGQALYY NQQQSKFSGL  480
QLPAQPLQIP ATSSVSESVS AASAAIASDP NFAAALAAAI TSIMNGSSHQ NNNTNNNNNV  540
ATSNGDNRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-23293369176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g034930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526480.0AY052648.1 Arabidopsis thaliana WRKY transcription factor 31 (WRKY31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089580.10.0PREDICTED: probable WRKY transcription factor 31 isoform X2
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLR0GHU50.0R0GHU5_9BRAS; Uncharacterized protein
STRINGXP_010434087.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.10.0WRKY DNA-binding protein 31