PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g036520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 255aa    MW: 28708.3 Da    PI: 5.3438
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g036520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind452.8e-142162542361
                     SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
    HSF_DNA-bind  23 engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 
                     ++++sf+v+++ +f +++Lp++Fkh+nf SF+RQLn+Y+
  Csa12g036520.1 216 KSNKSFIVWNPPDFCRDLLPRFFKHNNFLSFIRQLNTYN 254
                     45699*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549281.25E-5967IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3303.5E-41144IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM004157.1E-4187254IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-10215254IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.7E-14216253IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.12E-10217254IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-5233245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-5246254IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDHQIGYGVE VTRLSLSVTE KDFIDFFSFS GTIEYIDIVR DSYSQETAVV LCGATILDQC  60
DCITRWGQHH EEFDFWNATP RGFEDESYSN PHAQRGEFNA GEAVTKAQEV VKKMLATGFV  120
LGKDALSISK TFDESHGVSA ATMARVSQLE QRIGLTDKIF TGLEAVRMTD QSVLEMDESN  180
HGGSSSSLPP FLTKTSMDES VLMMMLHRIR SSRGVKSNKS FIVWNPPDFC RDLLPRFFKH  240
NNFLSFIRQL NTYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g036520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0509191e-148AY050919.1 Arabidopsis thaliana unknown protein (At1g14340) mRNA, complete cds.
GenBankAY0887821e-148AY088782.1 Arabidopsis thaliana clone 9495 mRNA, complete sequence.
GenBankAY0914171e-148AY091417.1 Arabidopsis thaliana unknown protein (At1g14340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476483.11e-109PREDICTED: binding partner of ACD11 1
TrEMBLR0IFH89e-99R0IFH8_9BRAS; Uncharacterized protein
STRINGXP_010449014.11e-121(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-27heat shock transcription factor A4A