PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g037090.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 225aa MW: 25185.8 Da PI: 8.4511

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g037090.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8e-11	36	79	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+ErrRR+++ ++ Lr+++P + ++Ka+i+e A+ YI +Lq Csa12g037090.1 36 EAERRRRQKLHVRLMALRSHVPIV-----TNMTKASIVEDAITYIGELQ 79 79*******************8.....69*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-15	26	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.98E-13	27	83	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-12	29	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.113	29	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	35	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-8	36	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGGGSIFQEP VRMNRRRQVT EENKGEDESF KSPNLEAERR RRQKLHVRLM ALRSHVPIVT 60 NMTKASIVED AITYIGELQK NVQSLSEKLF EMEEAPPEID DAITILVGKP TRCSSPLPSI 120 LDFNYPAITI PDLKEEVTIT RTVTNVGPVD SVYRAVVEPP EGVKIVVEPE ALVFDWNTKK 180 LGFKVRVSSS HKSNTGYFFG SFTWTDGTRN VTIPLSVRTR VLSP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g037090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF104533	1e-138	EF104533.1 Capsella rubella clone E30_26 genomic sequence.
GenBank	HQ379632	1e-138	HQ379632.1 Capsella rubella S-locus region genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010449086.1	9e-78	PREDICTED: subtilisin-like protease SBT3.12 isoform X1
Refseq	XP_010449087.1	9e-78	PREDICTED: subtilisin-like protease SBT3.12 isoform X2
Swissprot	F4JJH5	3e-59	SBT3C_ARATH; Subtilisin-like protease SBT3.12
TrEMBL	V4LX48	9e-64	V4LX48_EUTSA; Uncharacterized protein
STRING	XP_010449087.1	3e-77	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8358	25	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	1e-54	bHLH family protein

Publications ? help Back to Top
Beers EP,Jones AM,Dickerman AW The S8 serine, C1A cysteine and A1 aspartic protease families in Arabidopsis. Phytochemistry, 2004. 65(1): p. 43-58 [PMID:14697270] Rautengarten C, et al. Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family. PLoS Comput. Biol., 2005. 1(4): p. e40 [PMID:16193095] Tripathi LP,Sowdhamini R Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics, 2006. 7: p. 200 [PMID:16895613] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]