PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g041900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 127aa    MW: 15166.4 Da    PI: 10.1841
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g041900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind58.81.5e-1812102299
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F +++y+++ed+e + +isw +++nsfv+++ eef ++ +   F  ++f+ F   L  YgF+++k+ +++        e+ ++ F +g+ e +++
  Csa12g041900.1  12 FHMRIYKLVEDPESDPIISWGKDNNSFVIWNLEEFDRRNIVDKFDCNRFSQFRADLRHYGFRRIKKGSGE-------LEYGNEDFVRGHPERMKT 99 
                     7889****************************************************************99.......************999998 PP

                     XXX CS
    HSF_DNA-bind  97 ikr 99 
                     +  
  Csa12g041900.1 100 MMI 102
                     654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-22797IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-218100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-208103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-1712100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-51235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-56375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MAHNFPKGLP VFHMRIYKLV EDPESDPIIS WGKDNNSFVI WNLEEFDRRN IVDKFDCNRF  60
SQFRADLRHY GFRRIKKGSG ELEYGNEDFV RGHPERMKTM MIKAFRKHRA KFEAKEAAKE  120
MQRLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g041900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449323.12e-90PREDICTED: heat stress transcription factor A-4a-like
TrEMBLR0GL954e-64R0GL95_9BRAS; Uncharacterized protein
STRINGXP_010449323.19e-90(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.12e-43HSF family protein