PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g041910.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HSF

Protein Properties

Length: 127aa MW: 15093.3 Da PI: 9.9761

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g041910.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	59.4	9.6e-19	12	101	2	98
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F +++y+++ed++++ lisw +++nsfv+++ eef ++ + F +f+ F L YgF+++k+ +++ eF h+ F +g+ e l+ Csa12g041910.1 12 FHRRIYKLVEDPATDPLISWGKDNNSFVIWNLEEFIRRDIVDKFDCGKFSEFRSELRHYGFRRIKKGSGE-------LEFGHEDFVRGHPERLKA 99 78899*************************************************************99.......************9998 PP XX CS HSF_DNA-bind 97 ik 98 + Csa12g041910.1 100 MM 101 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.7E-25	8	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.0E-22	8	97	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.27E-22	8	100	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	5.3E-6	12	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.3E-18	12	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.3E-6	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MAQNFPNGLT LFHRRIYKLV EDPATDPLIS WGKDNNSFVI WNLEEFIRRD IVDKFDCGKF 60 SEFRSELRHY GFRRIKKGSG ELEFGHEDFV RGHPERLKAM MLKAFRKNRA RFLAQEAQEE 120 MQRLQI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g041910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010449324.1	9e-90	PREDICTED: heat stress transcription factor A-1-like
TrEMBL	R0H2D4	2e-61	R0H2D4_9BRAS; Uncharacterized protein
STRING	XP_010449324.1	3e-89	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5067	14	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19630.1	3e-47	HSF family protein