PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g041920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 171aa    MW: 19749.9 Da    PI: 9.3734
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g041920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind49.21.4e-15481432102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HH.HHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvldee.efakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     F   +ye++ed++ + +isw++ +n fv++ +e ++ +k+L   F   ++  F+  L  YgF++vk++ ++        eF+++ F +g+ + l+
  Csa12g041920.1  48 FYVDIYELVEDPSSDPIISWNKGNNGFVMCSQEeRIRSKILM-PFYCGKLCEFLSELSYYGFRRVKKKAGS-----GKLEFRNEDFVRGQPKRLK 136
                     88899***********************99865156777775.577899999*****************98.....67****************9 PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     ++  k+s
  Csa12g041920.1 137 DMMLKAS 143
                     9887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.0E-2644141IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.1E-1847138IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.35E-1947138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-64871IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-1548138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-699111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MMRVFFRVDE IILNFGGLLD IIDLGILRVE NEEEGMAEKY PNGVMGSFYV DIYELVEDPS  60
SDPIISWNKG NNGFVMCSQE ERIRSKILMP FYCGKLCEFL SELSYYGFRR VKKKAGSGKL  120
EFRNEDFVRG QPKRLKDMML KASRKRKAKF RAQQATKDAV DRLQLQSLHV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g041920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449325.21e-122PREDICTED: heat stress transcription factor A-4a-like
TrEMBLQ8L7H27e-52Q8L7H2_ARATH; Winged-helix DNA-binding transcription factor family protein
STRINGXP_010449325.15e-96(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.12e-53HSF family protein