PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g042020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 262aa    MW: 29262.4 Da    PI: 8.8138
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g042020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.32.3e-352378560
          zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                     ++c+rC s+ntkfCy+nny +sqPryfCk CrryWt+GGalrnvP+Ggg+rk k+
  Csa12g042020.1 23 PRACARCSSNNTKFCYFNNYRVSQPRYFCKRCRRYWTHGGALRNVPIGGGCRKAKR 78
                    578**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-212178IPR003851Zinc finger, Dof-type
PfamPF027014.6E-302478IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.7262478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDNLIVFADE DDNQQLNGVK PPPRACARCS SNNTKFCYFN NYRVSQPRYF CKRCRRYWTH  60
GGALRNVPIG GGCRKAKRAW IDKSPVSRMV SPDIQQVTPD IQQVNHQPFS YVQENNEFVG  120
SFGASSSSVA SGTVGNHFGS LSDIRGGMVP NVPPPPQSFQ PNYRLDFQNG PFENDYYNVG  180
SSTNPFINQS IGGGYVDNHN GYGMEPYKWN QSFNNTLSMN HDASTTGSRG SDMTMMNNDN  240
KNKIRYNSVI KHPCHIEKHG P*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g042020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449332.10.0PREDICTED: dof zinc finger protein DOF4.5-like
SwissprotO495506e-73DOF45_ARATH; Dof zinc finger protein DOF4.5
TrEMBLR0GXA81e-100R0GXA8_9BRAS; Uncharacterized protein
STRINGXP_010449332.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21080.13e-62Dof-type zinc finger domain-containing protein