PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g042130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 186aa    MW: 21706 Da    PI: 9.7837
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g042130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.42.3e-2713107190
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                     f  v t++dv+k++rlvlp++ ae+h     +++++++ l+++d++g+ W+++++y+++ g+yv+tkGW++Fvk+++L+egD+v F++  g++++
  Csa12g042130.1  13 FHIVVTSNDVGKLNRLVLPRQDAERHfppyASNNQNGTLLSFQDKNGKMWRFRYSYWNTLGTYVMTKGWSRFVKEKKLEEGDMVSFERGfGDESE 107
                     6678899***********************66677889*************************************************66444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-357119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-279112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-2311100No hitNo description
PROSITE profilePS5086314.12813117IPR003340B3 DNA binding domain
PfamPF023628.8E-2513107IPR003340B3 DNA binding domain
SMARTSM010192.9E-1813119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MMMVPAPKKE HMFHIVVTSN DVGKLNRLVL PRQDAERHFP PYASNNQNGT LLSFQDKNGK  60
MWRFRYSYWN TLGTYVMTKG WSRFVKEKKL EEGDMVSFER GFGDESERWK LYIDWSHRRD  120
MSLVQSHQFA KDIIDFLCVQ KDLGDSNALV GRLSAACERR GIKPKDNPFR SLAVIRYLQM  180
VEAFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-4591184113B3 domain-containing transcription factor NGA1
5os9_B5e-4591184113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g042130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322175.16e-69AP2/B3-like transcriptional factor family protein
SwissprotQ9MAN11e-68NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A1P8AT851e-67A0A1P8AT85_ARATH; AP2/B3-like transcriptional factor family protein
STRINGBo5g002790.15e-68(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-71B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]