PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g042940.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HSF

Protein Properties

Length: 275aa MW: 32528.3 Da PI: 8.1858

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g042940.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	29	2.7e-09	25	74	2	51
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HH CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfa 51 F++k y +++d++++++isw ng+sf+v+++ e +++Lp+ nf Csa12g042940.1 25 FMRKAYAMVDDPSTDSIISWGFNGDSFIVWHPPECYRDLLPRLLGVPNFY 74 9*******************************99999987666665 PP
2	HSF_DNA-bind	35.2	3.3e-11	109	193	2	98
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F++k y +++d++++ +isw n +sf+v+++ e +++Lp+ f +R +YgFkkv ++ + e++ + F kg+ ellek Csa12g042940.1 109 FMRKAYAMVDDPSTDLIISWGFNRDSFIVWHPPECYRDLLPRLLGVPDF---YR-FRLYGFKKVVSSVH--------LEYARDDFVKGRPELLEK 191 9******************999**************9876665...55.589**99985........6**************9 PP XX CS HSF_DNA-bind 97 ik 98 i Csa12g042940.1 192 IG 193 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	7.4E-11	22	77	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-4	24	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.2E-7	25	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.77E-10	25	76	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.1E-14	102	189	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.6E-15	105	195	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.22E-14	106	192	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.4E-10	109	193	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDGDNNNHGA PHRVSIEEKK ICLDFMRKAY AMVDDPSTDS IISWGFNGDS FIVWHPPECY 60 RDLLPRLLGV PNFYKFQLYQ GIIYMDGDNN NHGAPHPVSI EQKKMCLDFM RKAYAMVDDP 120 STDLIISWGF NRDSFIVWHP PECYRDLLPR LLGVPDFYRF RLYGFKKVVS SVHLEYARDD 180 FVKGRPELLE KIGQSFLEER EKKMKPLRDA MRNCKNMDEE RLVTKEWMAT LERERRVQVD 240 KDFLKDADLL LLRISKYKER RAKSFTRFGG YYYY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g042940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019089451.1	1e-138	PREDICTED: heat stress transcription factor A-4a-like isoform X1
TrEMBL	R0H2A2	2e-73	R0H2A2_9BRAS; Uncharacterized protein
STRING	XP_010445286.1	1e-135	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14212	11	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18870.1	2e-28	HSF family protein