PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g042950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 186aa    MW: 21818.7 Da    PI: 6.2997
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g042950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind43.21.1e-13221082100
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k y++++d++++ +isw  +gnsf+v++++e  +++Lp+  + + f  F+     YgF+  +  +k         +F+   F +g+ +ll+k
  Csa12g042950.1  22 FLNKAYSMVNDPSTDLIISWAPSGNSFIVWNRQECCQNLLPRLLQINDFGRFL----EYGFRHFDLGQK--------LQFACIDFVRGQPQLLDK 104
                     9******************************************9888777665....5*****998885........69**************** PP

                     XXXX CS
    HSF_DNA-bind  97 ikrk 100
                     i  +
  Csa12g042950.1 105 IVER 108
                     9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-1715102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-2018108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.76E-1419106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.1E-62245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-1322107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-66072IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDGENNNHHV LQLPRREEIS DFLNKAYSMV NDPSTDLIIS WAPSGNSFIV WNRQECCQNL  60
LPRLLQINDF GRFLEYGFRH FDLGQKLQFA CIDFVRGQPQ LLDKIVERYL KRLIHIHAVD  120
HFRNHTIPYL RNLAYSRETY NTEDFQTSLK LLEDIENLLS NWRMSTEPDG SNIISLLNNF  180
HLPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-121910817120Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g042950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449459.11e-136PREDICTED: heat stress transcription factor A-4a-like
TrEMBLD7MBZ41e-32D7MBZ4_ARALL; Uncharacterized protein
STRINGXP_010449459.11e-135(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.13e-21heat shock factor 1