PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g044340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 523aa    MW: 58260.9 Da    PI: 6.562
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g044340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.84.4e-27287340256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++++WtpeLH++Fv+aveqL G+e+A+P++ilelmkv+ Lt+++v+SHLQkYR++
  Csa12g044340.1 287 KKVDWTPELHKKFVQAVEQL-GIEQAIPSRILELMKVNTLTRHNVASHLQKYRMH 340
                     689*****************.********************************96 PP
2Response_reg28.48.3e-113913215109
                     HHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHH CS
    Response_reg  15 rqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpee 106
                     r+ le+ +y +v++++d +eal  + ++   +++ ++ ++     +G+++l+    +++ lp i++++    +++ +++ +Ga +fl Kp +pe+
  Csa12g044340.1  39 RSKLESTDY-IVTTFTDETEALSAVFKNPesFHIAIVEVNTNAeKEGFKFLEA---AKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEK 129
                     6678999**.**************9555556*********9997899999875...55699********************************** PP

                     HHH CS
    Response_reg 107 lvk 109
                     l +
  Csa12g044340.1 130 LKN 132
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011020.89624138IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.42E-1236140IPR011006CheY-like superfamily
PfamPF000722.5E-737132IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23008.7E-1438176No hitNo description
CDDcd001561.22E-642137No hitNo description
PROSITE profilePS5129415.915283342IPR017930Myb domain
SuperFamilySSF466891.52E-18285343IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-26285342IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24287340IPR006447Myb domain, plants
PfamPF002495.8E-8289338IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MVITANDLSK WENFPKGLKV LLLLNGDDDG DGFSAAETRS KLESTDYIVT TFTDETEALS  60
AVFKNPESFH IAIVEVNTNA EKEGFKFLEA AKDVLPTIMI STDHCITTTM KCIALGAVEF  120
LQKPLSPEKL KNIWQHVVHK AFNDGGSKPV KESVVSMLHL DTNMTIDEKD PAPSTPQLKQ  180
VSRLGDCQEN INCSMENVNS STEKDNMEDQ DIGESKSVDT TNRKLDDNKV VVKEERGDSE  240
KEEQGETGDL ESERTDSVNC HKKEDDSKPV NKSSGTKNLS GNKTTRKKVD WTPELHKKFV  300
QAVEQLGIEQ AIPSRILELM KVNTLTRHNV ASHLQKYRMH RKNSLPKDDH NQRWALSREN  360
QRPIHRNNQQ RPVMAYPVWG LPSIHHPPRA IPPLWPPPLH CAGQPPPWHW KPPYPTVNGN  420
AWGCPVGPPV TGTYYTPNIT AGGFQYTNGV ETGFKMMPAT QPDEEMLDQV VKEAISKPWM  480
PLPLGLKPPS PESVLAELSR QGIPAVPSSS SSFLINGSHR LR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16286342157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g044340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3857250.0AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBankAY1439630.0AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449515.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_010449516.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_010449517.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLR0F4Q40.0R0F4Q4_9BRAS; Uncharacterized protein
STRINGXP_010449515.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]