PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g046790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 447aa    MW: 49878.7 Da    PI: 5.0186
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g046790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.5e-35361282103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed++++ ++sws ++nsf+++d++ef++ +Lpk+Fkh+n++SF+RQLn+YgF+kv++e+          eF++k F +g+k+ll+k
  Csa12g046790.1  36 FLSKTYDMVEDPATDAIVSWSPTNNSFIIWDQSEFSRYLLPKHFKHNNLSSFIRQLNTYGFRKVDSER---------YEFANKDFLRGQKHLLKK 121
                     9********************999*****************************************999.........78**************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i rk+s+
  Csa12g046790.1 122 ISRKRSA 128
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-5632125IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3333125IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3733125IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-193659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.4E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDGVVAGGGA NSGESAPPRN PHPATLLSAN ALPPPFLSKT YDMVEDPATD AIVSWSPTNN  60
SFIIWDQSEF SRYLLPKHFK HNNLSSFIRQ LNTYGFRKVD SERYEFANKD FLRGQKHLLK  120
KISRKRSAQG GHGGGTSDTQ TQQLSQGQGS LAALSSCVEV GRFGLEEEVE QLKRDKNVLM  180
QELVKLRQQQ QTTDNKLQVM VKRLQVMELR QQQIMSFLAK AVQNPTFLSQ FIQKQADSNN  240
MHVTEANKKR RLREDTTENQ SHSHSSAASD GHGQIVKYQP LRSDSMMWNM MKTDDEYPFL  300
DGFSSPNRVS GVTLQEVLPT TSQAYAPAAS GQHLSYLPST STPVPDTVMP QLTRESINDF  360
PTENYMDTEN IVSEPFISPS PFVDGIEDPD IDELMDNCEL LEECLAEIPV LGDETATLKN  420
SNDTNGRHMD KFIEELGLVT SKTEQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-293412527129Heat shock factor protein 1
5d5v_B7e-293412527129Heat shock factor protein 1
5d5v_D7e-293412527129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g046790.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089758.10.0PREDICTED: heat stress transcription factor A-1a-like
SwissprotP411510.0HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLV4LYA90.0V4LYA9_EUTSA; Uncharacterized protein
STRINGXP_010451408.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151011619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.10.0heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]