PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g046910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 302aa    MW: 34784.5 Da    PI: 6.7115
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g046910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.4e-31174227255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt +LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  Csa12g046910.1 174 PRMRWTATLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 227
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-15171228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27172228IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-23174228IPR006447Myb domain, plants
PfamPF002491.0E-6175226IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MELFPSQPDL YLKISRRREE EEEEEEEEEE EKENQEQEQE VERRLLGFRS KASDSDRESS  60
GNLIHALQFT SSKSEPIKTD NNQEHNESLD QDLRSMLMMR PIRGIPLYKN QVLDHYYYSS  120
TSPSPFFFSE VNGQHASRRI ITNPNCSYNI HHRNRRQAQP QPPRFTAKRG VRAPRMRWTA  180
TLHAHFVHAV QLLGGHERAT PKSVLELMDV QDLTLAHVKS HLQMYRTIKS TEKPTTSSGQ  240
SDTCENGTQV NSEREARDLQ GLWNNSSSEA RFHLKAKASS GVDISSNEVS DFKKFNQKAL  300
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-15175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-15175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-15175229357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-15175229357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-15175229357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-15175229357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-15175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-15175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-15175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-15175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-15175229458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-15175229458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g046910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486900.0AY048690.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI3 (KAN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449573.10.0PREDICTED: probable transcription factor KAN3 isoform X1
SwissprotQ941I21e-165KAN3_ARATH; Probable transcription factor KAN3
TrEMBLR0F5I81e-172R0F5I8_9BRAS; Uncharacterized protein
STRINGXP_010449573.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-141G2-like family protein