 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa12g053280.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
GATA |
| Protein Properties |
Length: 186aa MW: 20179.1 Da PI: 4.528 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa12g053280.2 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 25.4 | 2e-08 | 110 | 129 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20
C+ Cgt+ TplWR gp g+k
Csa12g053280.2 110 CVDCGTSRTPLWRGGPAGPK 129
******************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 186 aa
Download sequence Send
to blast |
FVLSVTPLRR LSLSSLSSSS LSLSLSVSLR FTEPSEVSDR SLILSFPLFL KLKLKLEERV 60
SIILNLCFSW INMSMTEETK TKLESAGDSS DVDNGNCSSS GSGGDTKKTC VDCGTSRTPL 120
WRGGPAGPKV KFLFNTAYDD AAVICSLTLD LLVLSGLIMV FTLFAVIVQC VWDQEQEEET 180
SSSWN*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK119021 | 4e-75 | AK119021.1 Arabidopsis thaliana At4g16141 mRNA for unknown protein, complete cds, clone: RAFL21-34-K14. |
| GenBank | AK228025 | 4e-75 | AK228025.1 Arabidopsis thaliana mRNA for hypothetical protein, partial sequence., clone: RAFL14-54-B16. |
