PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g056900.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CPP

Protein Properties

Length: 643aa MW: 70157.3 Da PI: 5.5046

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g056900.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51	2.9e-16	339	377	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Csa12g056900.1 339 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 377 689**********************************96 PP
2	TCR	51.2	2.5e-16	424	463	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkNk Csa12g056900.1 424 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNKF 463 589***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.2E-19	338	379	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.465	339	464	IPR005172	CRC domain
Pfam	PF03638	6.1E-12	341	376	IPR005172	CRC domain
SMART	SM01114	3.2E-17	424	465	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-11	426	462	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
SPCGRDSTTE LSLVPYAPTQ GGNGSCEGSG TELQQKMYDN VQGKTETPDW ESLISDASEL 60 LIFDSPDASE AFRCFMMQRA STSEARFNTG VGMQTMQPDA NKKPESSDAI PYEAVSFLHR 120 GIRRRCLDFE MPGNKQTLSE NNTAACESSS RCIVPSIGLH LNAIAMSSKD CKTNVTQDYS 180 CSGNIQVGLQ SSISSTLQET LDQTENETRE DADQDVPVEP ALQELNLSSP KKKSENNTAA 240 CESSSRCIVP SIGLHLNAIA MSSKDCKTNV TQDYSCSGNI QVGLQSSISS TLQETLDQTE 300 NETREDADQD VPVEPALQEL NLSSPKKKRV KLDSGEGDSC KRCNCKKSKC LKLYCECFAA 360 GVYCIEPCSC IDCFNKPIHE DTVLATRKQI ESRNPLAFAP KVIRNSDSVL ETGDDASKTP 420 ASARHKRGCN CKKSNCLKKY CECYQGGVGC SINCRCEGCK NKFGRKDGSS ISDMEAEQED 480 ENETSEKNRT AKSQQKTEFL MRKEASSALP TTPTPDYRQE LVQLLPFSSS KNRMPPPQSL 540 LGGGSSSGIF DSQYIRKPDI NLTQSRREKP FENVADDRAE DMPEVLIHSP IPNIKSVSPN 600 GKRVSPPHME SSSSGSISGR RSGGRKLILQ SIPSFPSLTP QH*

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

SPCGRDSTTE LSLVPYAPTQ GGNGSCEGSG TELQQKMYDN VQGKTETPDW ESLISDASEL  60
LIFDSPDASE AFRCFMMQRA STSEARFNTG VGMQTMQPDA NKKPESSDAI PYEAVSFLHR  120
GIRRRCLDFE MPGNKQTLSE NNTAACESSS RCIVPSIGLH LNAIAMSSKD CKTNVTQDYS  180
CSGNIQVGLQ SSISSTLQET LDQTENETRE DADQDVPVEP ALQELNLSSP KKKSENNTAA  240
CESSSRCIVP SIGLHLNAIA MSSKDCKTNV TQDYSCSGNI QVGLQSSISS TLQETLDQTE  300
NETREDADQD VPVEPALQEL NLSSPKKKRV KLDSGEGDSC KRCNCKKSKC LKLYCECFAA  360
GVYCIEPCSC IDCFNKPIHE DTVLATRKQI ESRNPLAFAP KVIRNSDSVL ETGDDASKTP  420
ASARHKRGCN CKKSNCLKKY CECYQGGVGC SINCRCEGCK NKFGRKDGSS ISDMEAEQED  480
ENETSEKNRT AKSQQKTEFL MRKEASSALP TTPTPDYRQE LVQLLPFSSS KNRMPPPQSL  540
LGGGSSSGIF DSQYIRKPDI NLTQSRREKP FENVADDRAE DMPEVLIHSP IPNIKSVSPN  600
GKRVSPPHME SSSSGSISGR RSGGRKLILQ SIPSFPSLTP QH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-17	341	461	12	120	Protein lin-54 homolog
5fd3_B	5e-17	341	461	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	331	PKKKRVKL
2	324	332	PKKKRVKLD

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g056900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161539	1e-134	AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBank	CP002687	1e-134	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97337	1e-134	Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019089594.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
Refseq	XP_019089595.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	R0F1B1	0.0	R0F1B1_9BRAS; Uncharacterized protein
STRING	XP_010449996.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]