PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g057550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 257aa    MW: 28633.9 Da    PI: 4.2226
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g057550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.11.4e-1010471350
                    HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    f kR  g  KKA ELSvLC+  v  i +++++ ++ ++
  Csa12g057550.1 10 FQKRFPGFKKKATELSVLCGNSVGFICYGPNNDVQVWP 47
                    889999****************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.59E-13982IPR002100Transcription factor, MADS-box
PfamPF003191.5E-91046IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.3161050IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAPPQEENFF QKRFPGFKKK ATELSVLCGN SVGFICYGPN NDVQVWPEPQ DNPQALTGIV  60
GKFNALSDQK RKNHACDLYD FVSDINGLSG EDLRRHIDKL NSQLVGIKQR KICVLRRGDS  120
KNPKPKETEE DDHIRVSENA TITNCNVAMM PEDRLGFDEF PNYHETDSSL GSYAAFTDVG  180
VSEDSSLLDP FTFGDYFPVD PIPMPPTDNF GVDGLWDLCG MDLEFSSLFP GYDPLPTDSF  240
MSSYQTPVIE DFGSVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g057550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084806.11e-153PREDICTED: agamous-like MADS-box protein AGL49
TrEMBLD7KXG11e-82D7KXG1_ARALL; Uncharacterized protein
STRINGXP_010451530.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59810.15e-58AGAMOUS-like 50