PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g061600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 168aa    MW: 19025.7 Da    PI: 9.5386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g061600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-111121521055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR++iN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Csa12g061600.1 112 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 152
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.173102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-14102157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-13108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-13111156No hitNo description
PfamPF000107.7E-9112152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MLAHRWSIGC SGFLLLRSTR IYSSDPVIMG FFFYFSIPGK DDNSRSGYIY SLEPWTFLLM  60
VYWSLSWGCS TDQYGQSLSN SSDDEKASVT SVKGKTIATK GTATDTQSLY ARKRREKINE  120
RLKTLQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKSCRV FSKTELN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g061600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934811e-107AB493481.1 Arabidopsis thaliana At1g27740 mRNA for hypothetical protein, partial cds, clone: RAAt1g27740.
GenBankAY0854361e-107AY085436.1 Arabidopsis thaliana clone 151587 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451559.15e-60PREDICTED: transcription factor bHLH54-like
STRINGXP_010451559.12e-59(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.16e-40root hair defective 6-like 4