PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g062830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 249aa    MW: 28743.8 Da    PI: 9.0959
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g062830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822153.71.3e-47283180
          DUF822  1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeae 80
                    ++++r+ptw+ErEnnkrRERrRR +aaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrk +  +  ee+e
  Csa12g062830.1  2 TSGTRMPTWRERENNKRRERRRREMAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKMKIEQegEEKE 83
                    5899******************************************************************876666333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.9E-43384IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTSGTRMPTW RERENNKRRE RRRREMAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG  60
WIVEPDGTTY RKMKIEQEGE EKEKEKRSVF GNQRRRREAD DSFNVLIVLK FAGEGGERVD  120
VQKLFAYIGL FTLVALWWLV WPLTALGMNP SLPYHTLKVD EVVLANGFVG RVLSDYFWYV  180
TMILCCQLDD SKSQAFSDNF SKNLSSTETL SLEIYHSNNN IKRNTNLSQT QKLENLLGLR  240
VNGIDTAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-20672372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-20672372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-20672372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-20672372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11724RRERRRRE
21924ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g062830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0575383e-64AY057538.1 Arabidopsis thaliana AT4g32140/F10N7_50 mRNA, complete cds.
GenBankAY1130573e-64AY113057.1 Arabidopsis thaliana AT4g32140/F10N7_50 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155111117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.13e-30BES1/BZR1 homolog 4