PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g062870.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 345aa MW: 37504.8 Da PI: 8.6381

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g062870.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.5e-34	86	140	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Csa12g062870.1 86 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 140 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-32	83	142	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.541	83	143	IPR017930	Myb domain
SuperFamily	SSF46689	6.27E-17	85	142	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-24	86	141	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-7	88	138	IPR001005	SANT/Myb domain
Pfam	PF14379	9.9E-25	184	230	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
INSSLRCLWI SKNLHIPPLC PLTFLLHFPG KIAEKIKIKF SGGGGKRKRM YSAIHSSLPL 60 DGSLGDYSDG TNLPIDACLV LTTDPKPRLR WTSELHERFV DAVTQLGGPD KATPKTIMRT 120 MGVKGLTLYH LKSHLQKFRL GRQSCKESID NSKDVSCVGE SQDTGSSSTS SLRMAAQEQN 180 ESYQVTEALR AQMEVQRRLH EQLEVQRRLQ QRIETQGKYL QSILEKACKA IEEQAVAFAG 240 LEAAREELSE LAIKVSISNG CQGGTTTNTF DTTKITIPSL SELAVAIENK NNCSAESSLT 300 SSTVGSPVSA ALMKKRQRGV FGNGDCLVVG HDEAGWVIPS SSVG*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

INSSLRCLWI SKNLHIPPLC PLTFLLHFPG KIAEKIKIKF SGGGGKRKRM YSAIHSSLPL  60
DGSLGDYSDG TNLPIDACLV LTTDPKPRLR WTSELHERFV DAVTQLGGPD KATPKTIMRT  120
MGVKGLTLYH LKSHLQKFRL GRQSCKESID NSKDVSCVGE SQDTGSSSTS SLRMAAQEQN  180
ESYQVTEALR AQMEVQRRLH EQLEVQRRLQ QRIETQGKYL QSILEKACKA IEEQAVAFAG  240
LEAAREELSE LAIKVSISNG CQGGTTTNTF DTTKITIPSL SELAVAIENK NNCSAESSLT  300
SSTVGSPVSA ALMKKRQRGV FGNGDCLVVG HDEAGWVIPS SSVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	86	142	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	86	142	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	86	142	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	86	142	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g062870.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY087771	0.0	AY087771.1 Arabidopsis thaliana clone 38327 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010450183.1	0.0	PREDICTED: protein PHR1-LIKE 3-like isoform X2
Swissprot	Q8LAJ7	0.0	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	R0GXT3	0.0	R0GXT3_9BRAS; Uncharacterized protein
STRING	XP_010435238.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-165	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]