PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g070920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SAP
Protein Properties Length: 450aa    MW: 49412.4 Da    PI: 6.4461
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g070920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP750.71.1e-22824482454
             SAP   2 ssssssssseseegseggeggdassgesegpsssrqr.aanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqr 95 
                     sssss  ss+++++     g + s+g +e+ps sr+r  an+vwpePfle+la+qva+das+s+G laaa+alanvf+vc+tw+avsrsd+lwq 
  Csa12g070920.1   2 SSSSS--SSNNGDS-----GAGGSGGVFEAPSPSRPRrGANDVWPEPFLESLAVQVAVDASSSAGLLAAAPALANVFRVCTTWQAVSRSDHLWQL 89 
                     43333..3333333.....444556899******998799******************************************************* PP

             SAP  96 ltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqh 190
                     l+r++W+rt+l++dtWr+e+iyrhrtarnfrtr+++y+tlqfdp+dvde   +d+lsCrcl+lsd ylaaGfadG+vrlf l++rlhv+t++p  
  Csa12g070920.1  90 LSRQVWARTHLMHDTWRDEFIYRHRTARNFRTRTHTYFTLQFDPSDVDE---PDSLSCRCLTLSDIYLAAGFADGTVRLFLLNNRLHVRTLRPPL 181
                     *********************************************9998...689**************************************** PP

             SAP 191 rdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGs 285
                     rdr+GrfsravsGivisdsrl+fat+dGdihva idg  ++++r+a++Gd+vndGalvdf+G++rWwvGl+aGvpGrafhiWd+++ee++fvGG+
  Csa12g070920.1 182 RDRFGRFSRAVSGIVISDSRLTFATMDGDIHVADIDG--VGHTRTAYAGDIVNDGALVDFTGCARWWVGLFAGVPGRAFHIWDCNSEETTFVGGT 274
                     ************************************9..66****************************************************** PP

             SAP 286 ltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvvvdsrGvatvrrvenleevcr 379
                     ltdPeavmGWh+ltelt+++Gr+r++++etavaCt+++++++dlrnqgv+++e+ee+ rGl v+++d+++eayv++dsrG+a+vrrv++ e+vc+
  Csa12g070920.1 275 LTDPEAVMGWHTLTELTTSLGRLRISGNETAVACTRWKIMAIDLRNQGVIIGEDEEQrRGLTVTGFDTNEEAYVRMDSRGNASVRRVNTQETVCE 369
                     ***************************************************99888779************************************ PP

             SAP 380 frvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsss....dgtihlldfga 454
                     frv+g aqr+v+gCvn+ +al++aggv+rvWe+e+ + ylys+rervgev+a+vad+rhvav+ss    +++ihl+dfga
  Csa12g070920.1 370 FRVSGaAQRRVMGCVNRLHALMCAGGVMRVWEVESGA-YLYSIRERVGEVDAIVADERHVAVASSsstaQSIIHLWDFGA 448
                     *****9*****************************77.************************9986777899*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813838.99E-665117IPR001810F-box domain
Gene3DG3DSA:1.20.1280.505.8E-666132No hitNo description
Gene3DG3DSA:2.130.10.103.3E-10141229IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.9E-11143216IPR017986WD40-repeat-containing domain
SuperFamilySSF509782.9E-11276445IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.3E-10352446IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSSSSSSSNN GDSGAGGSGG VFEAPSPSRP RRGANDVWPE PFLESLAVQV AVDASSSAGL  60
LAAAPALANV FRVCTTWQAV SRSDHLWQLL SRQVWARTHL MHDTWRDEFI YRHRTARNFR  120
TRTHTYFTLQ FDPSDVDEPD SLSCRCLTLS DIYLAAGFAD GTVRLFLLNN RLHVRTLRPP  180
LRDRFGRFSR AVSGIVISDS RLTFATMDGD IHVADIDGVG HTRTAYAGDI VNDGALVDFT  240
GCARWWVGLF AGVPGRAFHI WDCNSEETTF VGGTLTDPEA VMGWHTLTEL TTSLGRLRIS  300
GNETAVACTR WKIMAIDLRN QGVIIGEDEE QRRGLTVTGF DTNEEAYVRM DSRGNASVRR  360
VNTQETVCEF RVSGAAQRRV MGCVNRLHAL MCAGGVMRVW EVESGAYLYS IRERVGEVDA  420
IVADERHVAV ASSSSTAQSI IHLWDFGAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g070920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2231250.0AJ223125.1 Arabidopsis thaliana mRNA for sterile apetala.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450421.10.0PREDICTED: transcriptional regulator STERILE APETALA
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A178UR360.0A0A178UR36_ARATH; SAP
STRINGXP_010450421.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]