PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g077450.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 179aa MW: 20530 Da PI: 8.1875

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g077450.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	50.8	4.8e-16	2	66	32	97
DUF573 32 ddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk.ehdqkifelskkiWg 97 +d++a+y +++s+++++sk+ql +Ki ++K++f++ +++ k +sf+ ++d++ifels iWg Csa12g077450.1 2 SDWNAIYTRIRGSMESDFSKRQLQDKINKMKRRFNRARSN--GRKIISFTDdADDKQIFELSTVIWG 66 69*********************************999..666777776157789*******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	9.5E-13	2	66	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MSDWNAIYTR IRGSMESDFS KRQLQDKINK MKRRFNRARS NGRKIISFTD DADDKQIFEL 60 STVIWGGNNT KTASCENYMD QRKEDDVPCG EQHVLIDDGE KDKSEDLNVL QEALEMAASF 120 RSLGSYQQRS LLRNLKNIGD TQRKELTDEW KALLAQDMQL GIKKQSFYAK LVNTGFSA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g077450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010450559.1	1e-130	PREDICTED: GLABROUS1 enhancer-binding protein-like 3
Swissprot	Q9SJM4	1e-16	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	R0F6M4	2e-72	R0F6M4_9BRAS; Uncharacterized protein
STRING	XP_010450559.1	1e-129	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	5e-19	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]