PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g077550.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 237aa MW: 26150.8 Da PI: 9.6974

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g077550.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.9	3.2e-33	62	140	3	82
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssa 82 +kk++++++h kv+gR+RRvRl+++caar+++L++eLG+++d++tieWLlqqa+p+i+ +tg++ ++ ++ ++s ++s+ Csa12g077550.1 62 KKKKPNKDRHLKVEGRGRRVRLPLLCAARIYQLTKELGLKSDGETIEWLLQQAEPSIISATGNGIKPIGAT-TDSVVVSQ 140 79*************************************************************66665333.33333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.794	67	121	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.7E-26	67	134	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDPKKNPNFL NASPHHQNND KKRKQTVVKG FDIVVGDKEL KTKTKEKEEE ERNQLLIEQE 60 KKKKKPNKDR HLKVEGRGRR VRLPLLCAAR IYQLTKELGL KSDGETIEWL LQQAEPSIIS 120 ATGNGIKPIG ATTDSVVVSQ PRPLLTADLM VGHNTQGGAP TPRSQMAANG LLWWMNETGQ 180 NTTERVFDLN CGIEFGFKGV SEMGLGNNQR PGLELALSQD SGNVGALGVY QQMGQE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g077550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010450576.1	1e-174	PREDICTED: transcription factor TCP6-like
Swissprot	Q9FLM6	9e-82	TCP6_ARATH; Transcription factor TCP6
TrEMBL	D7MIZ9	1e-89	D7MIZ9_ARALL; Uncharacterized protein
STRING	XP_010450576.1	1e-174	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	1e-80	TCP family protein

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]