PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g077560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 710aa    MW: 82129.1 Da    PI: 9.0816
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g077560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09427469146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el ++  k++G++ W+t a  +g  + +k++k+ w+ 
   Csa12g077560.1 427 KGVWTQEDLELVIEFQKKHGND-WRTLADALG--KDRKHVKDAWRR 469
                      799*******************.********8..899****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-5352423IPR009057Homeodomain-like
SMARTSM007178.3E-4353424IPR001005SANT/Myb domain
PROSITE profilePS500904.565356417IPR017877Myb-like domain
PROSITE profilePS500907.48422471IPR017877Myb-like domain
SuperFamilySSF466896.06E-8426484IPR009057Homeodomain-like
SMARTSM007171.7E-4426473IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-6426469IPR009057Homeodomain-like
PfamPF139211.4E-10430488No hitNo description
PROSITE profilePS500906.899472540IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-5475541IPR009057Homeodomain-like
SMARTSM007179476542IPR001005SANT/Myb domain
SuperFamilySSF466892.61E-5520595IPR009057Homeodomain-like
PROSITE profilePS500907.538542595IPR017877Myb-like domain
SMARTSM0071731546597IPR001005SANT/Myb domain
PROSITE profilePS500905.25616667IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MAEDNKKKKK SDDVRVDPGG TVEEVVSEHS STKKEKKNKK KNREIKDDSA GEDGERESEK  60
LGEDALVKKI KSKKQVIDSE AEDGVEKKKK KKKKKKKKKK KKKKKSKKES GSDVLGNSES  120
SKVCVKRKRE DCDLGAEEYT DKEVKRKSKK KKPSVDSETS LNSTNDAKRS FMEANTSVDP  180
EDDNKDSTKL AKKDRKKKEK QQIVDSEVED NKLINSTNDA RKKSKEKDAK KIQNVDSEAE  240
ENDLNSAKDA KKKRKKKKKQ SDVSEAEENN NDGKDAKKKR KKKQSEVSEA EENNNDAKKK  300
RKKKKQERGQ GDKDVTTPSS KSTKRVTFSD QVEFFPAEDE ESEEDEAEVK LVRGKRFTKE  360
EDELVKKAVL EYVDNHALGD DGVKMVMECK SHKQLKGCWK EIASALPWRA YDSVYHRAHT  420
IFEEGSKGVW TQEDLELVIE FQKKHGNDWR TLADALGKDR KHVKDAWRRI RLASKKKGHW  480
TREEYQNLFD LVNKDIRMKA FQEKHSKHGM LKDNIPWMAI SDVLGTRDHV TCCTKWYDQL  540
TSPMVAKGTW ANVDDYRLLE ELLKLDAACI DDVDWDYLLE NRDGEACRKR WNQMVLHIGI  600
PKSKTFLEQV EILSERNSEN AFDFSISKTE ELIEXKLDAA CIDDVDWDYL LENRDGEACR  660
KRWNQMVLHI GIPKSKTFLE QVEILSERYR PDIAEDREDF DNRPYDPED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191104KKKKKKKKKKKKKK
298107KKKKKKKSKK
3194199RKKKEK
4250258KKKRKKKKK
5280302KKKQSEVSEAEENNNDAKKKRKK
6298302KKRKK
7298304KKRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g077560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankAB4937720.0AB493772.1 Arabidopsis thaliana At5g41020 mRNA for hypothetical protein, partial cds, clone: RAAt5g41020.
GenBankAY5196530.0AY519653.1 Arabidopsis thaliana MYB transcription factor (At5g41020) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450577.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLR0GFG20.0R0GFG2_9BRAS; Uncharacterized protein
STRINGXP_010450577.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein