PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g077900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 420aa    MW: 45900.5 Da    PI: 10.1738
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g077900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.6e-10144168126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +k + C+++ + G Ck+Gd+C+F H+
  Csa12g077900.1 144 PKKSVCKYWKA-GNCKRGDQCQFLHS 168
                     68999******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004855.8E-6253IPR006083Phosphoribulokinase/uridine kinase
Gene3DG3DSA:3.40.50.3001.2E-4273IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5010316.164143170IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-8143169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7144168IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7144168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-8145168IPR000571Zinc finger, CCCH-type
SuperFamilySSF509788.01E-29167416IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.9E-26176414IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.025257293IPR001680WD40 repeat
PfamPF004000.0034266293IPR001680WD40 repeat
PROSITE profilePS5008210.876277302IPR001680WD40 repeat
PROSITE profilePS5029415.162277342IPR017986WD40-repeat-containing domain
PROSITE patternPS006780280294IPR019775WD40 repeat, conserved site
PRINTSPR003201.5E-5280294IPR020472G-protein beta WD-40 repeat
SMARTSM003207.0E-5296333IPR001680WD40 repeat
PfamPF004000.0018298332IPR001680WD40 repeat
PROSITE profilePS500828.704303342IPR001680WD40 repeat
PRINTSPR003201.5E-5320334IPR020472G-protein beta WD-40 repeat
SMARTSM003204.2375412IPR001680WD40 repeat
PRINTSPR003201.5E-5399413IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0016301Molecular Functionkinase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVSDADVRLA RRIRRDIVER GRDFNSVLEQ APRRFSQGRN FGVKRQQDFA ADVVSRRPYA  60
PYDNTMRKSP NKVSRNLVWT SKEYKSPEGN RPRKYEANGS TKPPVFGKGC SVVRNQPRKN  120
AAYGPRSSSV SDTRGPVSRA NSSPKKSVCK YWKAGNCKRG DQCQFLHSWS CFPGLAMVAA  180
LEGHKKAIKG IALPEGSDKL FSAFNVQTSK DLHLDGVVGQ VHAMTVAKGM LFARTSCSLA  240
AYQSGKLRTL SLILSNTSHL SRDITDSGEV TCFVVGGQLL YSGSVDRTIK VWDLNTLQCI  300
TTLKQHTDTV TSLLCWDKCL ISSSLDGTIK VWACSENDVL KSVVHALCGM HDAEAKPIIF  360
CSYQNGTVGI YGLPSFEERG KMFSTHTIST LTVGPGGLLF SGDKGGNMRV WSLAAGPKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g077900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450592.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGXP_010450592.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein