PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g077930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 252aa    MW: 27695.3 Da    PI: 9.9088
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g077930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.5e-09111135126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +k + C+++ + G Ck+G++C+F H+
  Csa12g077930.1 111 PKKSVCKYWKA-GNCKRGEQCQFLHC 135
                     68999******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.544110137IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-7110136IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6111135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-6111134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6112134IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.18E-12133236IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.107.5E-12135231IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.6E-4141180IPR001680WD40 repeat
PROSITE profilePS5029412.104148189IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.981148189IPR001680WD40 repeat
PfamPF117152.8E-4163193No hitNo description
PROSITE patternPS006780167181IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MNYEAPRRFS QGRNFGVKRQ QDFAADVVSR RPYAPYDNKV SRNLVWTSQE YKSPEGNRPR  60
KYEANGSAKP PVLGKGYSVV PNQPRKNAAY GPRSSSVSDT RGPVSRANSS PKKSVCKYWK  120
AGNCKRGEQC QFLHCWSCFP GLAMVAALEG HKKDIKGIAL PEGSDKLFSV SSDGTLRIWD  180
CHTGQCAFNV QTSKDLHLDG VVGQVHAMTV AKGMLFARTS SGSISVWKAT DSESDPFKYL  240
TSLEGCYEPK P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g077930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450592.11e-163PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X1
SwissprotQ9FKR91e-138C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ151e-143D7MJ15_ARALL; WD-40 repeat family protein
STRINGXP_010450592.11e-163(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.11e-140C3H family protein