PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g079560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 341aa    MW: 39152.2 Da    PI: 6.9129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g079560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-16103147348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT+ Ed  l+++vk+  ++ W++Ia+++  gRt+kqc++rwq++l
   Csa12g079560.1 103 KWTESEDTELKKLVKEVEPNKWTKIAKKLK-GRTGKQCRERWQNHL 147
                      8****************************9.*************97 PP
2Myb_DNA-binding461.2e-14155197347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eEd +l++++k  G++ W  Ia++++ gR+++ +k++w++ 
   Csa12g079560.1 155 AWSKEEDHILIELHKVVGTK-WVNIAQKLP-GRSPNCIKNHWNTT 197
                      7*******************.*********.************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.0696151IPR017930Myb domain
SMARTSM007179.4E-16100149IPR001005SANT/Myb domain
SuperFamilySSF466892.06E-28100194IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-20103150IPR009057Homeodomain-like
CDDcd001675.52E-14103147No hitNo description
PfamPF139212.2E-17104161No hitNo description
Gene3DG3DSA:1.10.10.601.8E-19151200IPR009057Homeodomain-like
PROSITE profilePS5129418.643152202IPR017930Myb domain
SMARTSM007171.9E-12152200IPR001005SANT/Myb domain
CDDcd001672.21E-9155198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNSITNKNNI HLVYGLQGHT LWDETVHNAE LTKRVCVPAL DQMMGGPRSF DVPVPESIKN  60
TTREIMNQHE GQKMVKTYQK EKKKMVRTSK HSKKGNIIKA KAKWTESEDT ELKKLVKEVE  120
PNKWTKIAKK LKGRTGKQCR ERWQNHLHPD IKDVAWSKEE DHILIELHKV VGTKWVNIAQ  180
KLPGRSPNCI KNHWNTTKRR VQKQSGENLN LAGNYILENY VRYVIINDNL SKSTETDGET  240
TNTEDDDEYK DMFFEEPDSN MDGGTHIVDV RTQTIDAGTQ TIDAGMQTID AGTLNNEPLV  300
NAPTTSYYVP TPEVFTWENY ATELCEPVNE SLKDLMQWWE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-341012004103MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-341012004103C-Myb DNA-Binding Domain
1msf_C5e-341012004103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g079560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450669.10.0PREDICTED: myb-like protein A
TrEMBLR0GJE81e-95R0GJE8_9BRAS; Uncharacterized protein
STRINGXP_010450669.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40430.11e-79myb domain protein 22