PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g079700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 196aa    MW: 22674.9 Da    PI: 10.0833
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g079700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-152971145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +++W++ Ed++lv+++k+ G++ W+ Ia++++ gR+++ +k++w+
   Csa12g079700.1 29 KKSWSEKEDQILVEVHKLVGNK-WTEIAKRLP-GRSENIVKNHWN 71
                     679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.2981023IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-101034IPR009057Homeodomain-like
SuperFamilySSF466894.16E-231082IPR009057Homeodomain-like
PROSITE profilePS5129424.4812478IPR017930Myb domain
SMARTSM007175.5E-142876IPR001005SANT/Myb domain
PfamPF002492.8E-142971IPR001005SANT/Myb domain
CDDcd001676.15E-103174No hitNo description
Gene3DG3DSA:1.10.10.609.6E-173572IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDSNRKNVPR IGKQCRERWH NHLRPDIKKK SWSEKEDQIL VEVHKLVGNK WTEIAKRLPG  60
RSENIVKNHW NATKRRLLSM RNRRSDFLPL GKKALENYIW SITINNNVFL MNRGADTVTA  120
NAEMKNNKCE HVVDGVNLNL VARRQTAAMV MDASTTAVYV PEKTAVTWGN DFARVYEPMD  180
DTCMDAHEWL ELANF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29107640106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of target genes (PubMed:27681170). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner (PubMed:18695688). Together with MYB118, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g079700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2 but repressed by MYB118. {ECO:0000269|PubMed:27681170}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285962.27e-77transcription factor MYB115
SwissprotQ1PDP94e-76MY115_ARATH; Transcription factor MYB115
TrEMBLR0H2H41e-75R0H2H4_9BRAS; Uncharacterized protein
STRINGBostr.7200s0009.1.p2e-87(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.12e-78myb domain protein 115
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]