PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g081250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 244aa    MW: 28281.2 Da    PI: 10.1142
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g081250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-1386128347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++ eE ++l++a+k+lG++ W++Iar+++ gRt+  + + w k+
   Csa12g081250.1  86 AFSDEENKKLLEAHKELGSK-WSKIARRFN-GRTDRAVHNQWDKL 128
                      79******************.*********.***********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.2522678IPR017877Myb-like domain
SuperFamilySSF466892.12E-2066136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-76791IPR009057Homeodomain-like
PROSITE profilePS5129417.1279133IPR017930Myb domain
SMARTSM007176.2E-1183131IPR001005SANT/Myb domain
CDDcd001672.69E-886129No hitNo description
PfamPF002492.3E-1186128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1392134IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDFDTSRIFP KYIKSILQRP LDDDVQEEIN ALLRRSDKVK EKEKEKQVRR WTFLEDLKLK  60
GLVAISAKTC RSRWFNHLDP RINDDAFSDE ENKKLLEAHK ELGSKWSKIA RRFNGRTDRA  120
VHNQWDKLMK QKLKKPSPPH QVTANDKTED SVRDENTKIN NSSLKIPQEE TTNYLRSKHL  180
TEAMEYSARH HHFSYLIPTV SLEMFTPHVP ISQPSSSSLP SKAKDTKAKI PPKFIDFLGV  240
GDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-173813317108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g081250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451793.11e-149PREDICTED: transcription factor WER-like
TrEMBLD7MJE02e-49D7MJE0_ARALL; Uncharacterized protein
STRINGXP_010451793.11e-148(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1909957
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.24e-33myb domain protein 110