PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g081760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 149aa    MW: 17095.3 Da    PI: 9.4193
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g081760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.44.9e-26255255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     r++Wt++ H+rFveave LGG+  AtPk+il++m+  gLtl+++kSHLQ+YR 
  Csa12g081760.1  2 SRVHWTTDRHHRFVEAVEFLGGERTATPKKILNFMGGRGLTLSQIKSHLQMYRN 55
                    69***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.021158IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-23256IPR009057Homeodomain-like
SuperFamilySSF466891.79E-15258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24257IPR006447Myb domain, plants
PfamPF002492.3E-8354IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSRVHWTTDR HHRFVEAVEF LGGERTATPK KILNFMGGRG LTLSQIKSHL QMYRNKKEGV  60
SVKERRMIQK MNQRQSQQYL EIYECIPDAI QNQQNTKKVT PTEVSCKSLY QSSRVGKNEN  120
RDNDVIASGD GTNDEEDMSL ELTLGLKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g081760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450782.11e-109PREDICTED: myb family transcription factor PHL11-like
TrEMBLR0HDE71e-56R0HDE7_9BRAS; Uncharacterized protein
STRINGXP_010450782.11e-108(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.11e-47G2-like family protein