PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13491s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 102aa    MW: 11746 Da    PI: 9.7376
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13491s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.82.4e-1226100162
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkryk 62 
                     +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk
  Csa13491s010.1  26 CWSEEATFTLIQAWGNRFVELSRGNLRQKHWQEVANAVndrhfnsgrnvsaAKSQPYRTDVQCKNRIDTLKKKYK 100
                     8************************************************997777789****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-1924101No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MMDSVHDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG NRFVELSRGN LRQKHWQEVA  60
NAVNDRHFNS GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VE
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13491s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180841e-133AK118084.1 Arabidopsis thaliana At3g58630 mRNA for unknown protein, complete cds, clone: RAFL19-33-K15.
GenBankAL1370821e-133AL137082.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22.
GenBankBT0055201e-133BT005520.1 Arabidopsis thaliana clone U50694 unknown protein (At3g58630) mRNA, complete cds.
GenBankCP0026861e-133CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100416.14e-71PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_019101939.15e-72PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG87e-25ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLR0FPF36e-69R0FPF3_9BRAS; Uncharacterized protein
STRINGXP_010504818.12e-70(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.19e-57sequence-specific DNA binding transcription factors