PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g002700.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 212aa MW: 23407.3 Da PI: 8.6181

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g002700.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.8	1e-12	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +g +t q++s+ qky Csa13g002700.1 56 RESWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 100 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.12E-16	50	106	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.942	51	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-6	54	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-18	54	103	IPR006447	Myb domain, plants
SMART	SM00717	7.6E-10	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-10	56	100	IPR001005	SANT/Myb domain
CDD	cd00167	5.10E-8	58	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTSTNPVVGE ALPSETITDA TAEMTTTTVS SSSLSTEAGE APEKKVRKAY TITKSRESWT 60 EGEHDKFLEA LQLFDRDWKK IEDFVGSKTV IQIRSHAQKY FLKVQKNGTL AHVPPPRPKR 120 KAAHPYPQKA SKNAQMSLHV SMTFPPQINN LPGYTSWDDD TSALLNIAVS GVTPPXSQAT 180 CFQQYVVGCH VSCNIKFLPM TCRFEDPATR L*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250, ECO:0000269\|PubMed:17363273}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g002700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ937209	1e-176	AJ937209.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like1 (lcl1 gene).
GenBank	AK317012	1e-176	AK317012.1 Arabidopsis thaliana AT5G02840 mRNA, complete cds, clone: RAFL16-09-C03.
GenBank	AY042894	1e-176	AY042894.1 Arabidopsis thaliana putative protein (F9G14_150) mRNA, complete cds.
GenBank	AY081522	1e-176	AY081522.1 Arabidopsis thaliana putative protein (At5g02840) mRNA, complete cds.
GenBank	AY519514	1e-176	AY519514.1 Arabidopsis thaliana MYB transcription factor (At5g02840) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010452141.1	1e-119	PREDICTED: protein REVEILLE 4 isoform X2
Swissprot	Q6R0G4	1e-103	RVE4_ARATH; Protein REVEILLE 4
TrEMBL	R0FGY3	1e-111	R0FGY3_9BRAS; Uncharacterized protein
STRING	XP_010452140.1	1e-118	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02840.3	4e-84	LHY/CCA1-like 1

Publications ? help Back to Top
Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]