PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g003730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 894aa    MW: 101292 Da    PI: 6.6959
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g003730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.71.8e-29123208187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+y+k+keg+ +r  ++ +++++f+qlea
  Csa13g003730.1 123 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYRKTKEGKAGR--QDGKHYRFFRQLEA 208
                     8*************************************999*****************************98..55667*******85 PP
2trihelix637e-20425510182
        trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                     +W +qe+ +L+e+r++m++++++   g++++ lWee+++k+ + gf +rs+  Ckekwe++++ ++k+k++ +k+++++ss+c  +
  Csa13g003730.1 425 CWDEQEIIKLMEIRTSMDSAFQEilgGCSDEFLWEEIAAKLVQLGFdQRSALLCKEKWEWISNGMRKEKKQINKKRKDNSSSCGVY 510
                     7*********************98889*******************999********************99999988998888655 PP
3trihelix637e-20725810182
        trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                     +W +qe+ +L+e+r++m++++++   g++++ lWee+++k+ + gf +rs+  Ckekwe++++ ++k+k++ +k+++++ss+c  +
  Csa13g003730.1 725 CWDEQEIIKLMEIRTSMDSAFQEilgGCSDEFLWEEIAAKLVQLGFdQRSALLCKEKWEWISNGMRKEKKQINKKRKDNSSSCGVY 810
                     7*********************98889*******************999********************99999988998888655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.98122181IPR017877Myb-like domain
PfamPF138374.7E-20123209No hitNo description
CDDcd122034.23E-18123188No hitNo description
PfamPF138371.0E-11424510No hitNo description
CDDcd122036.41E-18424493No hitNo description
PROSITE profilePS500906.051426483IPR017877Myb-like domain
PfamPF138371.0E-11724810No hitNo description
CDDcd122036.41E-18724793No hitNo description
PROSITE profilePS500906.051726783IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MDQDQHPQYG IPELRQLMKG GGRTTTTSPS TSSHFPSDFF GFNLAPALPQ QPHRLHQFTT  60
DQEMGFLPRG IHGLGGGGSS TAGNNSNLNA STSGGGGGVG FSGFLDGGGF GGGVGGDGGG  120
TGRWPRQETL TLLEIRSRLD HKFKEANQKG PLWDEVSRIM SEEHGYQRSG KKCREKFENL  180
YKYYRKTKEG KAGRQDGKHY RFFRQLEALY GDSNNLVSCP NHNTQFMSSA IHGFHTQNPL  240
NVTTTTSNIH NVDSVHGFHQ SLSLSNNYNS SELELMTSSS EGNDSSSRRK TRNWKGKIKE  300
FIDANMKRLI ERQDVWLEKL TKVIEDKEEQ RMMKEEEWRK TEAARIDKEH LFWAKERARM  360
EARDVAVIEA LQYLTGKPLI KPLCSSPEER INGNNEIRNN SENQNENGSD QTMTNNVTVK  420
GSGSCWDEQE IIKLMEIRTS MDSAFQEILG GCSDEFLWEE IAAKLVQLGF DQRSALLCKE  480
KWEWISNGMR KEKKQINKKR KDNSSSCGVY YPRTEENPIX NHNTQFMSSA IHGFHTQNPL  540
NVTTTTSNIH NVDSVHGFHQ SLSLSNNYNS SELELMTSSS EGNDSSSRRK TRNWKGKIKE  600
FIDANMKRLI ERQDVWLEKL TKVIEDKEEQ RMMKEEEWRK TEAARIDKEH LFWAKERARM  660
EARDVAVIEA LQYLTGKPLI KPLCSSPEER INGNNEIRNN SENQNENGSD QTMTNNVTVK  720
GSGSCWDEQE IIKLMEIRTS MDSAFQEILG GCSDEFLWEE IAAKLVQLGF DQRSALLCKE  780
KWEWISNGMR KEKKQINKKR KDNSSSCGVY YPRTEENPIY NNQESGYNDN DQHQMNEQGN  840
VGSSTSNANA NVTTGNPSGA MAASTNCFPF FMGDGDQNLW ESYGLRLSKG ENQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g003730.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5557280.0AY555728.1 Arabidopsis thaliana trihelix transcription factor (PETAL LOSS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490858.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS00.0PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A178U7740.0A0A178U774_ARATH; PTL
STRINGXP_010490858.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.10.0Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]