PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g003840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 487aa    MW: 54892.9 Da    PI: 4.6408
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g003840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.91.9e-07423478147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT eE+e l+ +v+++  +      W++I ++      ++Rt+ ++k++w++ 
   Csa13g003840.1 423 RLFWTFEEEEMLKVGVEKFAAEakknmPWRKILEMGEkvfdETRTPADLKDKWRNM 478
                      678******************9**********99877*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-8417480IPR009057Homeodomain-like
PROSITE profilePS500907.805418479IPR017877Myb-like domain
SuperFamilySSF466891.64E-9421482IPR009057Homeodomain-like
SMARTSM007171.7E-4422481IPR001005SANT/Myb domain
CDDcd116601.59E-10426480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKMRAKSILV RSSRKSPDPS LASLPDDEAN ENLCSGVSTT HCDTDDVEIV PDTFDERDVP  60
HKKRHCLGTT SETTDRGVSV DPPVLNLDAC IVCEVADDRV SRCCGIDCLL SFHGECLYTD  120
LGDSSEDLAN PFCPYCWLKI LALKSKTLKE KTVEAEKAVF RYLDKEVKSK VENDFDMSNG  180
EKTPLIEETD QLDDDQGEVG TDKVTEEVVG ASEEEERVAT TENFQDAEND ETAKDQTTRV  240
RTGAGQKLDV LPFLSMQESF SGKEQDQVKQ NEKQRGRRRR EVGASEEEER VATENFQDAE  300
NDKNDETAID HTRVRTVAGE KVDVSPFLST QQSFSGKEQG QAKQNEKRRR RRGIELNTID  360
CEMSSKGSSD ERNGDDEIEQ VTSSAQVTSP SGNTKNQQAT TLVVAKSKTV RDISFFKKDQ  420
RRRLFWTFEE EEMLKVGVEK FAAEAKKNMP WRKILEMGEK VFDETRTPAD LKDKWRNMVK  480
MNKTTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346351KRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g003840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937351e-158AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780.
GenBankAK1178771e-158AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14.
GenBankAY5195431e-158AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452274.10.0PREDICTED: transcriptional regulator ATRX
TrEMBLR0HA350.0R0HA35_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010452274.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327