PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g003870.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 24350.3 Da PI: 7.6612

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g003870.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.8	3.3e-17	75	127	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eq+ Le F+++ +++ e++ +L+++lgL+ rq vWFqNrRa++k Csa13g003870.1 75 NKRLTSEQIASLEVSFQEDIKLDSERKLKLSRELGLQPRQTAVWFQNRRARWK 127 5679************************************************9 PP
2	HD-ZIP_I/II	112.6	2.5e-36	73	161	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +k +rl++eq+++LE sF+e+ kL++erK +l+reLglqprq avWFqnrRAR+k k+lE+ y++L+++yda+ +en++L +ev++Lr+ Csa13g003870.1 73 KKNKRLTSEQIASLEVSFQEDIKLDSERKLKLSRELGLQPRQTAVWFQNRRARWKVKHLEESYDSLRQEYDAVWKENQMLYDEVKKLRA 161 589************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.92E-17	57	128	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.131	69	129	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	72	133	IPR001356	Homeobox domain
CDD	cd00086	1.12E-13	73	130	No hit	No description
Pfam	PF00046	1.0E-14	74	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-17	75	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEWSTTSNVQ NERDPFMPPP RLESNWLHSF NYDLFAGNSY THAAVTQTGP VPESEKMINT 60 YHCDSSNNNE MIKKNKRLTS EQIASLEVSF QEDIKLDSER KLKLSRELGL QPRQTAVWFQ 120 NRRARWKVKH LEESYDSLRQ EYDAVWKENQ MLYDEVKKLR AIILRDQGLM MNINQIAGGG 180 QTNGIGGYNN SPMIVASSRW TPISQPPNPW *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g003870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM214233	1e-127	KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds.
GenBank	KM214234	1e-127	KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010456386.1	1e-157	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	1e-81	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A077B3F2	1e-116	A0A077B3F2_9BRAS; RCO-A
STRING	XP_010456386.1	1e-157	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	8e-79	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]