PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g008100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 705aa    MW: 81184.9 Da    PI: 9.387
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g008100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08648691445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W+   +  lv+a k ++++   +W+++a  ++ g+t +qck ++ 
   Csa13g008100.1 648 WSDVQERALVQALKTFPKEtnqRWERVATAVP-GKTMNQCKKKFA 691
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.75E-19129231IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.7E-19149252IPR001623DnaJ domain
SMARTSM002712.3E-13152227IPR001623DnaJ domain
CDDcd062578.93E-13153224IPR001623DnaJ domain
PROSITE profilePS5007617.36153235IPR001623DnaJ domain
PfamPF002261.3E-16153232IPR001623DnaJ domain
PRINTSPR006253.4E-7158176IPR001623DnaJ domain
PRINTSPR006253.4E-7176191IPR001623DnaJ domain
PRINTSPR006253.4E-7207227IPR001623DnaJ domain
PROSITE patternPS006360212231IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.657521574IPR017877Myb-like domain
SMARTSM007173.5E-4525576IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-7527568IPR009057Homeodomain-like
CDDcd001670.00667528566No hitNo description
SMARTSM007171.2E-8644696IPR001005SANT/Myb domain
SuperFamilySSF466894.04E-9647700IPR009057Homeodomain-like
PROSITE profilePS500907.236648694IPR017877Myb-like domain
CDDcd001671.25E-5648694No hitNo description
PfamPF002497.3E-7648692IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-5648693IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MEKYKIKKRV SKQLPPPFPP ELIELSFSSF LYDLRELRRR NSRQTKSKRR LAQYLSWGIN  60
SAIKLLTYSS ELADGKALYV SSNCHPVKAV NREPAGHAFH SAALKLRGCA KEATGKNEDT  120
DKKVPKEKDS EYIPSYDSHN NKGKKKSGKQ QHDHYALLGL GNLRYLATED QIRKSYREAA  180
LKHHPDKLAT LLLAEDTEEA KQAKKDEIES HFKLIQEAYE ILMDSTKRRI FDSTDEFDDE  240
VPSDCAPKDF FKVFGPAFKR NARWSTNPRV PDLGDENTPL KEVDSFYSWW YSFKSWREFP  300
EEEEHDIEQA ESREEKRWME RENTKKSQKA RKEEHARIRV LVDNAYKKDI RILKRKEEEK  360
AMKLEKKEAK IMAKRKLEEE AAASIEEERR RKEEEAKRAA EAAQLHKRTK EKEKKLLRKE  420
RSRLRTLSAP VLSEHLLGIS VEHVEDLCMS LNTEQLRKLC DKMENKEGLA LAKVIKNGDC  480
SDDDEAESKE EEVVVAVKQN GHIEAKVETN GHVEAKVDTA THQKKEKPWS KEEIDMLRKG  540
TTKFPKGTSQ RWEVISEYIG RSVEEILKAT KTVLLQKPDS AKAFDSFLEN RKPAASIASP  600
LSTREELGEP IIATKPHEED NSTKTETTEQ NSKGEEKNNS KPADPEGWSD VQERALVQAL  660
KTFPKETNQR WERVATAVPG KTMNQCKKKF AELKDIIRTK KPTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1424935220123Zuotin
5dje_B4e-1424935220123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373391KRKLEEEAAASIEEERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g008100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452525.10.0PREDICTED: dnaJ homolog subfamily C member 2-like isoform X2
RefseqXP_010452526.10.0PREDICTED: dnaJ homolog subfamily C member 2-like isoform X1
RefseqXP_019090241.10.0PREDICTED: dnaJ homolog subfamily C member 2-like isoform X3
TrEMBLR0FE250.0R0FE25_9BRAS; Uncharacterized protein
STRINGXP_010452525.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain