PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g008790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 240aa    MW: 25307.5 Da    PI: 10.225
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g008790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-073659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++Gd+C+F H
  Csa13g008790.1 36 KSKPCTKFFSTSGCPFGDNCHFLH 59
                    7789******************** PP
2zf-CCCH391.4e-12205230127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykt++C++f++ G C yGdrC+FaHg+
  Csa13g008790.1 205 YKTKICDRFSK-GNCTYGDRCHFAHGE 230
                     9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0683461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0843462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-63561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-83659IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-53659IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.92E-13110182IPR004088K Homology domain, type 1
SMARTSM003228.2E-10111181IPR004087K Homology domain
PROSITE profilePS5008413.586112176IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-14113180IPR004088K Homology domain, type 1
CDDcd001055.69E-11114176No hitNo description
PfamPF000133.6E-9114177IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.5E-16199234IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-8204230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.934204231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-9204234IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-10205230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDARKRGRPE AHNSNDGGFK RSKQEMESNS TGLGSKSKPC TKFFSTSGCP FGDNCHFLHY  60
VPGGYNAAAQ MTTLRPSVAQ VSRNMQGSGG AGGRFSLRGD PGLGPVSVFG ASATAKISVD  120
ASLAGAIIGK SGIHSKQICR QTGAKLSIKD HERDQNLKII ELDGTFEQIN VASGMVRELI  180
GRLGSVKKPQ GIGGSEGKPH PGSSYKTKIC DRFSKGNCTY GDRCHFAHGE AELRRSGMA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g008790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179740.0AK117974.1 Arabidopsis thaliana At5g06770 mRNA for unknown protein, complete cds, clone: RAFL19-18-C06.
GenBankBT0052600.0BT005260.1 Arabidopsis thaliana At5g06770 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452618.11e-177PREDICTED: zinc finger CCCH domain-containing protein 52-like isoform X1
SwissprotQ9FG301e-157C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLR0H7D61e-156R0H7D6_9BRAS; Uncharacterized protein
STRINGXP_010452618.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-159C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]