PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g008820.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 452aa MW: 51190.5 Da PI: 6.6396

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g008820.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.9	1.7e-31	191	245	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+++AtPk+il+lm+ +gLt+ hvkSHLQkYR+ Csa13g008820.1 191 KTRIRWTQDLHEKFVECVNRLGGADEATPKAILKLMDSDGLTIFHVKSHLQKYRI 245 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.085	188	248	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-17	188	245	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-28	190	246	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-23	191	246	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-8	195	244	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-20	275	322	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	6.7E-20	353	398	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MENINFEFSN ASQGSQLQSQ PQPPQPFNLQ NLNNMIQYNQ PSSPWTTETF SGFPPYDCSA 60 NQSFPLQCSS SKPYPSSFHP YHHQSSDHTS LEHTVSMVPM LPLPDQYMKP LYQRSCANDF 120 AAANASSASY SLSFEASQDP QELCRRTYSN SNVTHLNFSS SHQPKQTHPK FPSHTSFSSH 180 GGSVAPNCVN KTRIRWTQDL HEKFVECVNR LGGADEATPK AILKLMDSDG LTIFHVKSHL 240 QKYRIAKYMP ESLEGKFEKR ACGKELSQLD TKTGVQIKEA LQLQLDVQRH LHEQLEIQRN 300 LQLRIEEQGK QLKIMMEQQQ KTKESLMKTP EAEASLSLPA SDHTPDPPPP FLIKEALQLQ 360 LDVQRHLHEQ LEIQRNLQLR IEEQGKQLKI MMEQQQKTKE SLMKTPEAEA SLSLPASDHT 420 PDPPPPFLVQ DNTESLMLTS YGDNQLQSKI S*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MENINFEFSN ASQGSQLQSQ PQPPQPFNLQ NLNNMIQYNQ PSSPWTTETF SGFPPYDCSA  60
NQSFPLQCSS SKPYPSSFHP YHHQSSDHTS LEHTVSMVPM LPLPDQYMKP LYQRSCANDF  120
AAANASSASY SLSFEASQDP QELCRRTYSN SNVTHLNFSS SHQPKQTHPK FPSHTSFSSH  180
GGSVAPNCVN KTRIRWTQDL HEKFVECVNR LGGADEATPK AILKLMDSDG LTIFHVKSHL  240
QKYRIAKYMP ESLEGKFEKR ACGKELSQLD TKTGVQIKEA LQLQLDVQRH LHEQLEIQRN  300
LQLRIEEQGK QLKIMMEQQQ KTKESLMKTP EAEASLSLPA SDHTPDPPPP FLIKEALQLQ  360
LDVQRHLHEQ LEIQRNLQLR IEEQGKQLKI MMEQQQKTKE SLMKTPEAEA SLSLPASDHT  420
PDPPPPFLVQ DNTESLMLTS YGDNQLQSKI S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	191	248	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	191	248	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	191	248	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	191	248	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	191	248	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	191	248	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	191	248	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	191	248	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g008820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226644	0.0	AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBank	BT012658	0.0	BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010452621.1	0.0	PREDICTED: myb family transcription factor PHL5
Swissprot	Q0WVU3	0.0	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	D7LZU1	0.0	D7LZU1_ARALL; Uncharacterized protein
STRING	XP_010452621.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	0.0	G2-like family protein