PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g009120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 314aa    MW: 35143.5 Da    PI: 9.7698
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g009120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.9e-31130188260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsY++Ct+++C +kkkve+s   + ++ei+Y+g+Hnh+k
  Csa13g009120.1 130 DDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGLITEIVYKGSHNHPK 188
                     8********************************************************85 PP
2WRKY106.51.4e-33244301259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+ +dpk v++tYeg+Hnh+
  Csa13g009120.1 244 EDGYRWRKYGQKVVKGNPNPRSYYKCTFAGCCVRKHVERAFQDPKSVITTYEGKHNHQ 301
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-27123189IPR003657WRKY domain
SuperFamilySSF1182902.88E-25125189IPR003657WRKY domain
SMARTSM007742.2E-34129188IPR003657WRKY domain
PROSITE profilePS5081123.433130189IPR003657WRKY domain
PfamPF031061.8E-23130187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36228303IPR003657WRKY domain
SuperFamilySSF1182904.97E-29235303IPR003657WRKY domain
PROSITE profilePS5081136.529238303IPR003657WRKY domain
SMARTSM007748.6E-38243302IPR003657WRKY domain
PfamPF031063.3E-25244301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGSFDRQRVV PKFKSATPSP LPLSPSPYFT LPNGVSPADL LDSPILFTSS NILPSPTTGT  60
FPAESLNWKS NGLLIDQNDI KYEDGKEQLD FSFTNNHTTP PLFLPSMVTQ PLPQLDVSKS  120
ESLLSNKTSD DGYNWRKYGQ KQVKGSENPR SYFKCTYPNC LTKKKVETSL VKGLITEIVY  180
KGSHNHPKPQ STKRSASTAV AAAHQSSSHD IGEDEANAKR WKREENVKEP RVVVQTTSDI  240
DILEDGYRWR KYGQKVVKGN PNPRSYYKCT FAGCCVRKHV ERAFQDPKSV ITTYEGKHNH  300
QIPTPKRSHT SSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36130303877Probable WRKY transcription factor 4
2lex_A3e-36130303877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g009120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2246990.0AF224699.1 Arabidopsis thaliana WRKY DNA-binding protein 26 (WRKY26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452660.10.0PREDICTED: probable WRKY transcription factor 26 isoform X1
SwissprotQ9C5T30.0WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLD7LZX60.0D7LZX6_ARALL; WRKY DNA-binding protein 26
STRINGXP_010452660.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152911518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.10.0WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]