PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g009230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 658aa    MW: 73891 Da    PI: 9.4165
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g009230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.93.5e-21231284155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kp++ Wt  L + F++a++++ G +kA+Pk+il +m+v  Lt+e+v+SHLQkYR+
  Csa13g009230.1 231 KPKVSWTDGLNDLFLQAIQHI-GLDKAVPKKILAFMNVSYLTRENVASHLQKYRI 284
                     79*******************.********************************6 PP
2Response_reg65.23.1e-22181331109
                     EEEESSSHHHHHHHHHHHHHTTC.....EEEEEES..SHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegy.....eevaead..dgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                     vl+vdD+p++r+++ q+l +++y     +e+++ +  d+++al++lk+++  +Dli++D +m  m+Gl+l ++i+ee  +lp+i+v+a ++    
  Csa13g009230.1  18 VLVVDDDPVFRRAISQMLVQSRYrdpsvMEITVIAegDPTKALAILKHQRnnIDLIITDYNMLSMNGLQLKRRITEEIGNLPVIAVSADAN--KE 110
                     89*****************888855555455543312678999*99888888***********************9999********9888..66 PP

                     HHHHHTTESEEEESS--HHHHHH CS
    Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                     +e l+ Ga++fl Kp++  +l k
  Csa13g009230.1 111 KESLSCGAMGFLPKPIHATDLPK 133
                     89***************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.1E-2515143No hitNo description
SuperFamilySSF521721.99E-2316143IPR011006CheY-like superfamily
SMARTSM004481.7E-1916135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.85117139IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.4E-2018134IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.55E-2219131No hitNo description
SuperFamilySSF466892.69E-16229288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-22229288IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-25231284IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MTFAESLPNI SSDLRINVLV VDDDPVFRRA ISQMLVQSRY RDPSVMEITV IAEGDPTKAL  60
AILKHQRNNI DLIITDYNML SMNGLQLKRR ITEEIGNLPV IAVSADANKE KESLSCGAMG  120
FLPKPIHATD LPKIYQLALT YKRNGKSTLG TEPNHKANYT GVSVPQQIKM LPEQANVLKT  180
RKKYSSKADS RSLNSTNGSC LISTDGSRKN RKRKPNGGSE DGASPSQPSK KPKVSWTDGL  240
NDLFLQAIQH IGLDKAVPKK ILAFMNVSYL TRENVASHLQ KYRIFLRKVA DQGLMNIMSA  300
RGIDSMFRQN HMKELYFNQY TPSTSWYDTS LNNRSFYSKP AQGFGQSRLL STTREPPKYR  360
IFLRKVADQG LMSIMSARGI DSMFRHTQIK EPYFNRYTPS TSWYDTSLNN RSFYSKPGQG  420
FGQSRLLSTT REPPVRFNQM PYNYMNRSST YETHHVGSGS NLTLPIQSNL SLANQPSQNE  480
ERRSFFEPPV MANKIGQTSQ VHGFGQLGPS AINNFNNNMM SSFGSFTPNQ PGLGHFSYGM  540
QSFLNNNPEP NLELPQLEDL SVHSDLGKTD ELPYNISNIQ FDHNKGHYNG EIANTFAAPA  600
TNHTFAALEM NPPSSNTNPN QNQEQDANPD ISDWSFSDLQ DLVDEDFMNS LFTNDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19230290464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g009230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1636521e-161AL163652.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project).
GenBankCP0026881e-161CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491325.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9ZVD30.0ARR13_ARATH; Putative two-component response regulator ARR13
TrEMBLR0H0F30.0R0H0F3_9BRAS; Uncharacterized protein
STRINGXP_010491325.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-176response regulator 21