PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g009540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 249aa    MW: 28436 Da    PI: 8.0488
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g009540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07101120626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ f+  G C++Gd+C FaHg
  Csa13g009540.1 101 CPAFRN-GACHRGDSCEFAHG 120
                     666666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.42795122IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-495121IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-6100120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5101123IPR000571Zinc finger, CCCH-type
SMARTSM0035622130153IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MKKMLKSVSP MAFYDIGDQQ YSALGYILSK PGNVGAYDID PPMPTIDDAI YGSDEFRMYA  60
YKIKRCPRTR SHDWTECPYA HRGEKATRRD PRRHTYCAVA CPAFRNGACH RGDSCEFAHG  120
VFEYWLHPAR YRTRACNAGN LCQRKVCFFA HAPEQLRQSE GKHRCRYAYR PVRARGGNSN  180
GVAMRLDGED YDTSRSPEKS GKSGLDGNEE KVLLKCWSRM SIVDDHYELS DLDFDLNFGL  240
DWISELVD*
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g009540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545920.0AC254592.1 Capsella rubella clone CAP08-D18, complete sequence.
GenBankAY3507130.0AY350713.1 Capsella rubella clone BAC Cr33L6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452718.10.0PREDICTED: zinc finger CCCH domain-containing protein 54-like
SwissprotO650361e-162C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLQ6V5F91e-168Q6V5F9_9BRAS; Zn-finger transcription factor
STRINGXP_010452718.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-165C3H family protein