PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g011070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CAMTA
Protein Properties Length: 1024aa    MW: 115130 Da    PI: 5.9866
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g011070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1186.42.9e-5851222118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwl++ ei++iL+n++k+++++e++trp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+v+vl+cyYah+e n++fq
  Csa13g011070.1   5 MSEaRHRWLRPAEICEILQNHHKFHIASESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSVDVLHCYYAHGEGNENFQ 99 
                     45559****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rrcyw+Le++l +iv+vhylevk
  Csa13g011070.1 100 RRCYWMLEQDLMHIVFVHYLEVK 122
                     ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.8351127IPR005559CG-1 DNA-binding domain
SMARTSM010767.5E-854122IPR005559CG-1 DNA-binding domain
PfamPF038596.0E-517121IPR005559CG-1 DNA-binding domain
PfamPF018334.4E-4427501IPR002909IPT domain
SuperFamilySSF812963.64E-14427513IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.109.4E-4428501IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.203.8E-18611723IPR020683Ankyrin repeat-containing domain
PfamPF127962.1E-7611688IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.81611722IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.29E-19612722IPR020683Ankyrin repeat-containing domain
CDDcd002044.61E-14617720No hitNo description
SMARTSM002482900628657IPR002110Ankyrin repeat
PROSITE profilePS500888.63628660IPR002110Ankyrin repeat
PROSITE profilePS5008811.22661693IPR002110Ankyrin repeat
SMARTSM002480.0029661690IPR002110Ankyrin repeat
SMARTSM000150.51837859IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657838867IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.66E-7838887IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0025840858IPR000048IQ motif, EF-hand binding site
SMARTSM000150.047860882IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.359861885IPR000048IQ motif, EF-hand binding site
PfamPF006120.003863882IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MEQLMSEARH RWLRPAEICE ILQNHHKFHI ASESPTRPAS GSLFLFDRKV LRYFRKDGHN  60
WRKKKDGKTI KEAHEKLKVG SVDVLHCYYA HGEGNENFQR RCYWMLEQDL MHIVFVHYLE  120
VKGNRTSQGM KENNSNSVNG TSSVNIDSTA SPTSTLSSLC EDADSAPPYI SFGAGDSHQA  180
RSVLRASPEL QTGNCYGWTP PTGMHNVSHV HGNRVRESDS QRSVDVRAWD AVGNSLTRCH  240
GQPYCNDLLT QMQPCITDSM LVDENTDKGR RLMAEPIRNP LQTQSNWQIP VQDDISLPKG  300
HVDLFPHSGM TDDIDLALFE LSAEDNFETF SSLLGSDKQQ PFGNSYQYPP SSMESEYIPV  360
KQSLLRSEDS LKKVDSFSRW AIKELAEMED LQMQSTREDI AWTTVECETA AAGISLSPSL  420
SEEQRFTIVD FWPKCAATDA EVEVMVIGTF LLSPQEVTKY NWSCMFGEVE VPAEILVDGV  480
LCCHAPPHTA GHVPFYVTCS NRFPCSEVRE YDFLSGSTEK IDAADVHGPY TNEVASLQLR  540
FEKLLAHRAF VNEYHIFEDV GEKRRKISKI MLLKEEKEYL LPGTYQRDST KQEPKGQLLR  600
EQLEEKLYIW LIHKVTEEGK GPNMLDEDGQ GILHFVAALG YDWAIKPMLA AGVNINFRDA  660
NGWSALHWAA FSGREETVAV LVSLGADAGA LTDPSPELPL GKTAADLAYA NGHRGISGFL  720
AESSLTSYLE KLTVDSKENS SANSFGEKAV QTVSERTAAP MSYGDVPEKL SLKDSLTAVR  780
NATQAADRLH QVFRMQSFER KQLSEFDGDD KIDISDELAV SFAASKTKTP GHCDVSSLSS  840
AATHIQKKYR GWKKRKEFLL IRQRIVRIQA HVRGHQVRKQ YRTVIWSVGL LEKIILRWRR  900
KGKGLRGFKS SAIAKPVEPE PTVSAVSPTI PQEDEYDFLK EGRKQTEERL QKALTRVKSM  960
VQYPEARDQY RRLLTVVEGF RENEASSSAS INNEVGPVNC DEDDLIDIDS LLNDDTLMMS  1020
FSP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g011070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287400.0AK228740.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 1, complete cds, clone: RAFL16-07-H14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452931.10.0PREDICTED: calmodulin-binding transcription activator 1 isoform X3
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLR0H8F40.0R0H8F4_9BRAS; Uncharacterized protein
STRINGXP_010452929.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein