PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g013830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 442aa    MW: 49776.8 Da    PI: 8.3662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g013830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.3e-12114165148
                      TSSS-HHHH.....HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEd.....ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd     + l+++vkq+G + W+ I++++  gR +kqc++rw+++l
   Csa13g013830.1 114 KGQWTAEEDryicvLYLIKLVKQHGDRKWAIISEKFE-GRAGKQCRERWHNHL 165
                      789*****933333369********************.*************97 PP
2Myb_DNA-binding53.94e-17171213145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+  +v+a+++ G++ W+ Ia+ ++ gRt++++k++w+
   Csa13g013830.1 171 KDSWSEEEERVFVEAHTRIGNK-WAEIAKLIQ-GRTENSIKNHWN 213
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.198109165IPR017930Myb domain
SuperFamilySSF466893.74E-25111212IPR009057Homeodomain-like
SMARTSM007178.8E-10113167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-23115173IPR009057Homeodomain-like
PfamPF139213.2E-16117179No hitNo description
CDDcd001679.32E-12117165No hitNo description
PROSITE profilePS5129423.709166220IPR017930Myb domain
SMARTSM007171.2E-13170218IPR001005SANT/Myb domain
CDDcd001675.11E-10173216No hitNo description
Gene3DG3DSA:1.10.10.601.6E-18174218IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEDQRIQEKS LAHCAAPPLT AVERFLNSQK SGTLCFKTQE RSIDRPILKT ARAIETRKDN  60
KENMMMFGPR KGKNLAVNSG NRNVIGEMIV KGATTRDYQK STTCKKRPYK NLIKGQWTAE  120
EDRYICVLYL IKLVKQHGDR KWAIISEKFE GRAGKQCRER WHNHLRPDIK KDSWSEEEER  180
VFVEAHTRIG NKWAEIAKLI QGRTENSIKN HWNATKRRQN SKRKHKRSRN VDSNSSDIDD  240
LSPSAKRPCI LEDYIKSIEN NDKDNGVNII TTGGKNVLST SNLDDGDSTS SLLDDPYDEE  300
LVFLRNIFAN HPVSLEHMDL SQGSDEITQS SSSGFMFKNP NPKPSLHNNI VGNQLGTMVI  360
AEPAITSHLA SDIYLSDLLD GSASSSSLSF MSTNNSEHAA ENELFVPQAN STGERREMDL  420
IEMLSGSSTT GGTNNIWFPL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-421122192104C-Myb DNA-Binding Domain
1msf_C6e-421122192104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215226KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g013830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196200.0AY519620.1 Arabidopsis thaliana MYB transcription factor (At5g11050) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453145.10.0PREDICTED: myb-related protein 330-like
SwissprotQ9FY600.0MYB64_ARATH; Transcription factor MYB64
TrEMBLR0FKF00.0R0FKF0_9BRAS; Uncharacterized protein
STRINGXP_010453145.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.10.0myb domain protein 64
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]