PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g014390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 188aa    MW: 20377.7 Da    PI: 4.4711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g014390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35.2e-152441055
             AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Csa13g014390.1  2 RNWGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 44
                    57**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.22E-28154No hitNo description
Gene3DG3DSA:3.30.730.101.6E-26153IPR001471AP2/ERF domain
PROSITE profilePS5103220.152152IPR001471AP2/ERF domain
SMARTSM003807.5E-28158IPR001471AP2/ERF domain
PfamPF008471.9E-9244IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGTSAILN FPELADSFPR  60
PVSLSPRDIQ TAALKAAHME PMTSFSSSTS SSSSSSSSSS LSPTSSLESL VLVMDLSRTE  120
SEELGEIVEL PSLGASYDVD SAKLGNEFVF SDSMDYCLYP PPWGQSSDDN YGYGIIPNFS  180
HGLSWDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-142522172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g014390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1638140.0AL163814.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P22 (ESSA project).
GenBankAL1638150.0AL163815.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project).
GenBankAY5608510.0AY560851.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11590) mRNA, complete cds.
GenBankAY9401600.0AY940160.1 Arabidopsis thaliana DREB3 (DREB3) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419734.11e-111PREDICTED: dehydration-responsive element-binding protein 3
SwissprotQ9LYD31e-104DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLD7M4A21e-107D7M4A2_ARALL; Uncharacterized protein
STRINGXP_010419734.11e-111(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-104ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]