PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g015630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 125aa    MW: 14449.4 Da    PI: 7.416
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g015630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind70.53.3e-22211132101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F ++lye+++d +++ +iswse+g+sf+v++++e+ ++vLpk+   ++++ F+  L+++gFkkv++ee++       we+++++F +gk el e+
  Csa13g015630.1  21 FPSRLYEMVDDTSMDAIISWSESGKSFIVWNQTELCTHVLPKFSLSQKLSKFTFMLDTFGFKKVESEEER-------WEYANDNFVRGKPELAEE 108
                     8899****************************************************************98.......****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+++ 
  Csa13g015630.1 109 IHKRY 113
                     *9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.7E-2717112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-2219111IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-2619112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-2221112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-82144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-85971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-87284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MVRDNNCGGS SRSSIRPFRS FPSRLYEMVD DTSMDAIISW SESGKSFIVW NQTELCTHVL  60
PKFSLSQKLS KFTFMLDTFG FKKVESEEER WEYANDNFVR GKPELAEEIH KRYMASLPPK  120
AFVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g015630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453361.17e-89PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A087G6N83e-49A0A087G6N8_ARAAL; Uncharacterized protein
STRINGXP_010453361.13e-88(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.12e-24HSF family protein